Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.342e-8■■■■□ 19.4
SF3B1O75533 HSP90AA1-205ENST00000555662 429 ntTSL 25.84□□□□□ -1.472e-8■■■■□ 19.4
SF3B1O75533 PTEN-202ENST00000462694 383 ntTSL 23.43□□□□□ -1.862e-8■■■■□ 19.4
SF3B1O75533 WAC-212ENST00000448193 506 ntTSL 229.34■■■□□ 2.294e-6■■■■□ 19.3
SF3B1O75533 ACADVL-230ENST00000582379 833 ntTSL 310.31□□□□□ -0.762e-11■■■■□ 19.3
SF3B1O75533 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC14.14□□□□□ -0.151e-6■■■■□ 19.3
SF3B1O75533 DDX5-227ENST00000583894 712 ntTSL 211.18□□□□□ -0.624e-7■■■□□ 19.2
SF3B1O75533 ATXN2L-219ENST00000566007 471 ntTSL 310.04□□□□□ -0.82e-6■■■□□ 19.2
SF3B1O75533 SRSF1-206ENST00000583741 1465 ntTSL 522.61■■□□□ 1.213e-9■■■□□ 19.1
SF3B1O75533 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.62■□□□□ 0.733e-9■■■□□ 19.1
SF3B1O75533 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.533e-9■■■□□ 19.1
SF3B1O75533 GNL3-210ENST00000492349 729 ntTSL 28.87□□□□□ -0.993e-9■■■□□ 19.1
SF3B1O75533 KIF22-206ENST00000565736 1568 ntTSL 219.68■□□□□ 0.743e-6■■■□□ 19
SF3B1O75533 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.07■□□□□ 0.163e-6■■■□□ 19
SF3B1O75533 KIF22-207ENST00000568312 781 ntTSL 312.96□□□□□ -0.333e-6■■■□□ 19
SF3B1O75533 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.272e-6■■■□□ 19
SF3B1O75533 TMEM165-206ENST00000508561 756 ntTSL 515.08■□□□□ 04e-6■■■□□ 19
SF3B1O75533 RPS24-209ENST00000476545 815 ntTSL 314.34□□□□□ -0.112e-6■■■□□ 19
SF3B1O75533 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC12.71□□□□□ -0.382e-6■■■□□ 19
SF3B1O75533 RPS24-212ENST00000482069 539 ntTSL 312.26□□□□□ -0.452e-6■■■□□ 19
SF3B1O75533 RPS24-206ENST00000465692 778 ntTSL 211.47□□□□□ -0.572e-6■■■□□ 19
SF3B1O75533 TMEM165-210ENST00000514904 1522 ntTSL 210.2□□□□□ -0.784e-6■■■□□ 19
SF3B1O75533 RPS24-202ENST00000372360 510 ntAPPRIS P4 TSL 1 (best) BASIC9.21□□□□□ -0.942e-6■■■□□ 19
SF3B1O75533 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.362e-6■■■□□ 19
SF3B1O75533 RPS24-213ENST00000485708 544 ntTSL 25.64□□□□□ -1.512e-6■■■□□ 19
SF3B1O75533 TMEM165-207ENST00000509575 570 ntTSL 21.86□□□□□ -2.114e-6■■■□□ 19
SF3B1O75533 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.123e-6■■■□□ 18.9
SF3B1O75533 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.163e-6■■■□□ 18.9
SF3B1O75533 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.343e-6■■■□□ 18.9
SF3B1O75533 PPP6R1-204ENST00000587457 2389 ntTSL 216.41■□□□□ 0.227e-6■■■□□ 18.9
SF3B1O75533 CRBN-206ENST00000478353 566 ntTSL 28.89□□□□□ -0.997e-6■■■□□ 18.9
SF3B1O75533 CRBN-213ENST00000498700 1012 ntTSL 24.75□□□□□ -1.657e-6■■■□□ 18.9
SF3B1O75533 CRBN-204ENST00000450014 878 ntTSL 1 (best)3.28□□□□□ -1.887e-6■■■□□ 18.9
SF3B1O75533 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.145e-6■■■□□ 18.9
SF3B1O75533 GAS5-205ENST00000422008 497 ntTSL 35.06□□□□□ -1.62e-7■■■□□ 18.8
SF3B1O75533 GAS5-215ENST00000442067 1114 ntTSL 24.77□□□□□ -1.652e-7■■■□□ 18.8
SF3B1O75533 SLC25A37-209ENST00000521637 503 ntTSL 319.3■□□□□ 0.687e-8■■■□□ 18.8
SF3B1O75533 SLC25A37-210ENST00000522164 571 ntTSL 218.31■□□□□ 0.527e-8■■■□□ 18.8
SF3B1O75533 GUK1-218ENST00000469973 795 ntTSL 228.33■■■□□ 2.135e-6■■■□□ 18.8
SF3B1O75533 CD164-208ENST00000506649 778 ntTSL 323.45■■□□□ 1.345e-6■■■□□ 18.8
SF3B1O75533 PMPCA-202ENST00000371720 713 ntTSL 423.21■■□□□ 1.315e-6■■■□□ 18.8
SF3B1O75533 PMPCA-212ENST00000622209 1013 ntTSL 1 (best)23.01■■□□□ 1.275e-6■■■□□ 18.8
SF3B1O75533 PMPCA-207ENST00000612553 1174 ntTSL 222.81■■□□□ 1.245e-6■■■□□ 18.8
SF3B1O75533 ARIH2-204ENST00000433170 560 ntTSL 421.93■■□□□ 1.15e-6■■■□□ 18.8
SF3B1O75533 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.985e-6■■■□□ 18.8
SF3B1O75533 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.735e-6■■■□□ 18.8
SF3B1O75533 SDHAP2-201ENST00000455183 2001 ntBASIC19.5■□□□□ 0.715e-6■■■□□ 18.8
SF3B1O75533 LINC00969-207ENST00000429897 2131 ntTSL 218.63■□□□□ 0.575e-6■■■□□ 18.8
SF3B1O75533 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.518e-11■■■□□ 18.8
SF3B1O75533 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.23■□□□□ 0.515e-6■■■□□ 18.8
SF3B1O75533 ARIH2-206ENST00000449729 678 ntTSL 217.9■□□□□ 0.465e-6■■■□□ 18.8
SF3B1O75533 MRPS5-206ENST00000475895 1672 ntTSL 217.53■□□□□ 0.45e-6■■■□□ 18.8
SF3B1O75533 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.25■□□□□ 0.355e-6■■■□□ 18.8
SF3B1O75533 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.218e-11■■■□□ 18.8
SF3B1O75533 LINC00969-242ENST00000601648 745 ntTSL 315.66■□□□□ 0.15e-6■■■□□ 18.8
SF3B1O75533 CD164-209ENST00000512212 590 ntTSL 215.3■□□□□ 0.045e-6■■■□□ 18.8
SF3B1O75533 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.3■□□□□ 0.045e-6■■■□□ 18.8
SF3B1O75533 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.79□□□□□ -0.045e-6■■■□□ 18.8
SF3B1O75533 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.185e-6■■■□□ 18.8
SF3B1O75533 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.185e-6■■■□□ 18.8
SF3B1O75533 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC13.83□□□□□ -0.28e-11■■■□□ 18.8
SF3B1O75533 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.225e-6■■■□□ 18.8
SF3B1O75533 LINC00969-276ENST00000626706 608 ntTSL 513.55□□□□□ -0.245e-6■■■□□ 18.8
SF3B1O75533 PPP2R5C-216ENST00000556086 279 ntTSL 513.29□□□□□ -0.285e-6■■■□□ 18.8
SF3B1O75533 ARIH2-213ENST00000466850 546 ntTSL 213.23□□□□□ -0.295e-6■■■□□ 18.8
SF3B1O75533 RSRC2-213ENST00000527461 711 ntTSL 313.22□□□□□ -0.295e-6■■■□□ 18.8
SF3B1O75533 LINC00969-264ENST00000626089 792 ntTSL 513.14□□□□□ -0.315e-6■■■□□ 18.8
SF3B1O75533 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.315e-6■■■□□ 18.8
SF3B1O75533 MRPS5-202ENST00000345084 1359 ntTSL 212.93□□□□□ -0.345e-6■■■□□ 18.8
SF3B1O75533 RSRC2-208ENST00000525387 980 ntTSL 312.86□□□□□ -0.355e-6■■■□□ 18.8
SF3B1O75533 CD164-204ENST00000413644 2414 ntTSL 1 (best) BASIC12.39□□□□□ -0.435e-6■■■□□ 18.8
SF3B1O75533 LINC00969-297ENST00000627767 929 ntTSL 2 BASIC12.37□□□□□ -0.435e-6■■■□□ 18.8
SF3B1O75533 NOLC1-204ENST00000464969 2288 ntTSL 212.31□□□□□ -0.445e-6■■■□□ 18.8
SF3B1O75533 LINC00969-212ENST00000445430 4208 ntTSL 1 (best) BASIC12.24□□□□□ -0.455e-6■■■□□ 18.8
SF3B1O75533 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.495e-6■■■□□ 18.8
SF3B1O75533 NDC80-204ENST00000575515 553 ntTSL 510.98□□□□□ -0.655e-6■■■□□ 18.8
SF3B1O75533 NOLC1-207ENST00000488254 2441 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.695e-6■■■□□ 18.8
SF3B1O75533 CD164-202ENST00000310786 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.745e-6■■■□□ 18.8
SF3B1O75533 LINC00969-261ENST00000625882 484 ntTSL 510.02□□□□□ -0.815e-6■■■□□ 18.8
SF3B1O75533 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC9.97□□□□□ -0.815e-6■■■□□ 18.8
SF3B1O75533 TCERG1-210ENST00000510724 583 ntTSL 39.42□□□□□ -0.98e-11■■■□□ 18.8
SF3B1O75533 PPP2R5C-206ENST00000553554 564 ntTSL 59.33□□□□□ -0.925e-6■■■□□ 18.8
SF3B1O75533 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC9.27□□□□□ -0.925e-6■■■□□ 18.8
SF3B1O75533 NOLC1-202ENST00000405356 3967 ntTSL 1 (best) BASIC8.93□□□□□ -0.985e-6■■■□□ 18.8
SF3B1O75533 NOLC1-209ENST00000605788 3932 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -15e-6■■■□□ 18.8
SF3B1O75533 LINC00969-246ENST00000608699 415 ntTSL 58.63□□□□□ -1.035e-6■■■□□ 18.8
SF3B1O75533 NOLC1-208ENST00000603946 3217 ntTSL 1 (best)8.62□□□□□ -1.035e-6■■■□□ 18.8
SF3B1O75533 NOLC1-201ENST00000370007 3727 ntTSL 1 (best)7.16□□□□□ -1.265e-6■■■□□ 18.8
SF3B1O75533 NOLC1-206ENST00000477977 660 ntTSL 37.15□□□□□ -1.265e-6■■■□□ 18.8
SF3B1O75533 AP1G1-211ENST00000565642 2794 ntTSL 56.57□□□□□ -1.365e-6■■■□□ 18.8
SF3B1O75533 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.04□□□□□ -1.445e-6■■■□□ 18.8
SF3B1O75533 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.455e-6■■■□□ 18.8
SF3B1O75533 PSMB1-202ENST00000462957 1939 ntTSL 25.25□□□□□ -1.575e-6■■■□□ 18.8
SF3B1O75533 LMAN1-203ENST00000587918 678 ntTSL 25.19□□□□□ -1.585e-6■■■□□ 18.8
SF3B1O75533 ABHD5-202ENST00000413300 525 ntTSL 34.94□□□□□ -1.625e-6■■■□□ 18.8
SF3B1O75533 TARS-211ENST00000509410 782 ntTSL 33.75□□□□□ -1.815e-6■■■□□ 18.8
SF3B1O75533 RSRC2-219ENST00000532186 554 ntTSL 33.33□□□□□ -1.885e-6■■■□□ 18.8
SF3B1O75533 ACTR3-205ENST00000478928 5965 ntTSL 23.18□□□□□ -1.95e-6■■■□□ 18.8
SF3B1O75533 RSRC2-218ENST00000531639 522 ntTSL 23.17□□□□□ -1.95e-6■■■□□ 18.8
SF3B1O75533 CD164-206ENST00000499860 2845 ntTSL 1 (best)2.25□□□□□ -2.055e-6■■■□□ 18.8
Retrieved 100 of 46,956 protein–RNA pairs in 3808.4 ms