Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 AC003102.1-202ENST00000563394 1796 ntBASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 AP006587.3-201ENST00000525742 1516 ntBASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 AC008406.3-201ENST00000620001 1374 ntBASIC19.18■□□□□ 0.66
HIF3AQ9Y2N7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 FEM1AP4-201ENST00000443167 1987 ntBASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 IGHV3-19-201ENST00000521488 291 ntBASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 AC126544.1-201ENST00000580842 1059 ntBASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.17■□□□□ 0.66
HIF3AQ9Y2N7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 AC005229.4-201ENST00000610085 2198 ntBASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HIF3AQ9Y2N7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HIF3AQ9Y2N7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
HIF3AQ9Y2N7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 AC096631.2-201ENST00000436136 790 ntBASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HIF3AQ9Y2N7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms