Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.481e-14■■■□□ 16.2
DDX55Q8NHQ9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.69■■■□□ 2.181e-14■■■□□ 16.2
DDX55Q8NHQ9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC28.65■■■□□ 2.181e-14■■■□□ 16.2
DDX55Q8NHQ9 LSM7-202ENST00000585395 621 ntTSL 327.95■■■□□ 2.061e-14■■■□□ 16.2
DDX55Q8NHQ9 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.62e-12■■■□□ 16.2
DDX55Q8NHQ9 TKT-204ENST00000450814 1941 ntTSL 219.88■□□□□ 0.774e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.92■□□□□ 0.464e-9■■■□□ 16.2
DDX55Q8NHQ9 GTF3C1-211ENST00000569653 897 ntTSL 217.29■□□□□ 0.364e-9■■■□□ 16.2
DDX55Q8NHQ9 GTF3C1-205ENST00000564747 2798 nt16.05■□□□□ 0.164e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16■□□□□ 0.154e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-210ENST00000469678 1871 ntTSL 515.4■□□□□ 0.064e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.234e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-207ENST00000461139 1972 ntTSL 213.56□□□□□ -0.244e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-208ENST00000462138 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.344e-9■■■□□ 16.2
DDX55Q8NHQ9 TKT-206ENST00000460343 7286 ntTSL 212.75□□□□□ -0.374e-9■■■□□ 16.2
DDX55Q8NHQ9 GTF3C1-201ENST00000356183 7018 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.434e-9■■■□□ 16.2
DDX55Q8NHQ9 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.64e-9■■■□□ 16.2
DDX55Q8NHQ9 TTC31-204ENST00000424122 2806 ntTSL 1 (best)11.46□□□□□ -0.581e-6■■■□□ 16.2
DDX55Q8NHQ9 TTC31-201ENST00000233623 3235 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.681e-6■■■□□ 16.2
DDX55Q8NHQ9 TTC31-212ENST00000489152 4025 ntTSL 210.61□□□□□ -0.711e-6■■■□□ 16.2
DDX55Q8NHQ9 TTC31-213ENST00000491252 3860 ntTSL 210.48□□□□□ -0.731e-6■■■□□ 16.2
DDX55Q8NHQ9 TTC31-202ENST00000410003 3358 ntTSL 1 (best) BASIC10.24□□□□□ -0.771e-6■■■□□ 16.2
DDX55Q8NHQ9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.23e-10■■■□□ 16.2
DDX55Q8NHQ9 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC16.19■□□□□ 0.183e-10■■■□□ 16.2
DDX55Q8NHQ9 MT1E-203ENST00000568293 332 ntTSL 2 BASIC13.13□□□□□ -0.313e-10■■■□□ 16.2
DDX55Q8NHQ9 PSMD1-202ENST00000373635 3230 ntTSL 5 BASIC13.05□□□□□ -0.323e-10■■■□□ 16.2
DDX55Q8NHQ9 PSMD1-201ENST00000308696 3326 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.423e-10■■■□□ 16.2
DDX55Q8NHQ9 PSMD1-212ENST00000491229 546 ntTSL 25.51□□□□□ -1.533e-10■■■□□ 16.2
DDX55Q8NHQ9 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.613e-10■■■□□ 16.2
DDX55Q8NHQ9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC24■■□□□ 1.439e-9■■■□□ 16.2
DDX55Q8NHQ9 NME1-208ENST00000487481 987 ntTSL 219.47■□□□□ 0.712e-6■■■□□ 16.1
DDX55Q8NHQ9 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.969e-9■■■□□ 16.1
DDX55Q8NHQ9 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.39e-9■■■□□ 16.1
DDX55Q8NHQ9 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.41e-9■■■□□ 16.1
DDX55Q8NHQ9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.583e-6■■■□□ 16.1
DDX55Q8NHQ9 THAP7-206ENST00000476667 1671 ntTSL 523.13■■□□□ 1.293e-6■■■□□ 16.1
DDX55Q8NHQ9 THAP7-208ENST00000498406 1957 ntTSL 222.76■■□□□ 1.233e-6■■■□□ 16.1
DDX55Q8NHQ9 THAP7-204ENST00000471073 1809 ntTSL 221.73■■□□□ 1.073e-6■■■□□ 16.1
DDX55Q8NHQ9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.93e-6■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.064e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-212ENST00000616050 818 ntTSL 514.17□□□□□ -0.144e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC11.86□□□□□ -0.514e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC11.49□□□□□ -0.574e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC11.48□□□□□ -0.574e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.634e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-220ENST00000630370 3120 ntTSL 510.57□□□□□ -0.724e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-221ENST00000630858 3181 ntTSL 510.39□□□□□ -0.754e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-218ENST00000629785 3457 ntTSL 510.28□□□□□ -0.764e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-219ENST00000630255 3289 ntTSL 510.21□□□□□ -0.784e-14■■■□□ 16.1
DDX55Q8NHQ9 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)9.79□□□□□ -0.844e-14■■■□□ 16.1
DDX55Q8NHQ9 TMEM63B-203ENST00000371893 2921 ntTSL 1 (best)16.9■□□□□ 0.39e-10■■■□□ 16.1
DDX55Q8NHQ9 TMEM63B-209ENST00000533121 2465 ntTSL 1 (best)16.3■□□□□ 0.29e-10■■■□□ 16.1
DDX55Q8NHQ9 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.079e-10■■■□□ 16.1
DDX55Q8NHQ9 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.319e-10■■■□□ 16.1
DDX55Q8NHQ9 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.251e-11■■■□□ 16.1
DDX55Q8NHQ9 CSNK2A1-210ENST00000619801 655 ntTSL 310.43□□□□□ -0.743e-13■■■□□ 16.1
DDX55Q8NHQ9 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.786e-7■■■□□ 16.1
DDX55Q8NHQ9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.236e-7■■■□□ 16.1
DDX55Q8NHQ9 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.136e-7■■■□□ 16.1
DDX55Q8NHQ9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.44■■□□□ 1.665e-7■■■□□ 16.1
DDX55Q8NHQ9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.255e-7■■■□□ 16.1
DDX55Q8NHQ9 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.21■□□□□ 0.675e-7■■■□□ 16.1
DDX55Q8NHQ9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.47■□□□□ 0.395e-7■■■□□ 16.1
DDX55Q8NHQ9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.56■■■□□ 2.643e-6■■■□□ 16.1
DDX55Q8NHQ9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.98■■■□□ 2.553e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-208ENST00000593972 935 ntTSL 229.62■■■□□ 2.333e-6■■■□□ 16.1
DDX55Q8NHQ9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.273e-6■■■□□ 16.1
DDX55Q8NHQ9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.69■■■□□ 2.183e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-203ENST00000593397 572 ntTSL 228.68■■■□□ 2.183e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-210ENST00000594380 597 ntTSL 428.68■■■□□ 2.183e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-215ENST00000598654 590 ntTSL 327.92■■■□□ 2.063e-6■■■□□ 16.1
DDX55Q8NHQ9 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.8■■■□□ 2.043e-6■■■□□ 16.1
DDX55Q8NHQ9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.973e-6■■■□□ 16.1
DDX55Q8NHQ9 GLOD4-216ENST00000576670 562 ntTSL 425.86■■□□□ 1.733e-6■■■□□ 16.1
DDX55Q8NHQ9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC25.69■■□□□ 1.73e-6■■■□□ 16.1
DDX55Q8NHQ9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.95■■□□□ 1.593e-6■■■□□ 16.1
DDX55Q8NHQ9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.62■■□□□ 1.533e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC24.59■■□□□ 1.532e-8■■■□□ 16.1
DDX55Q8NHQ9 THAP7-205ENST00000471723 653 ntTSL 324.51■■□□□ 1.513e-6■■■□□ 16.1
DDX55Q8NHQ9 ABCA7-206ENST00000525073 1918 ntTSL 223.47■■□□□ 1.356e-7■■■□□ 16.1
DDX55Q8NHQ9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.335e-9■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-206ENST00000593525 709 ntTSL 322.6■■□□□ 1.213e-6■■■□□ 16.1
DDX55Q8NHQ9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.51■■□□□ 1.193e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.153e-6■■■□□ 16.1
DDX55Q8NHQ9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.141e-10■■■□□ 16.1
DDX55Q8NHQ9 JPT2-211ENST00000567717 857 ntTSL 321.91■■□□□ 1.13e-6■■■□□ 16.1
DDX55Q8NHQ9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.093e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-213ENST00000569256 911 ntTSL 1 (best)21.86■■□□□ 1.092e-8■■■□□ 16.1
DDX55Q8NHQ9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.071e-17■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.033e-6■■■□□ 16.1
DDX55Q8NHQ9 EGLN2-217ENST00000601733 584 ntTSL 421.39■■□□□ 1.013e-6■■■□□ 16.1
DDX55Q8NHQ9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.36■■□□□ 1.014e-9■■■□□ 16.1
DDX55Q8NHQ9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.011e-17■■■□□ 16.1
DDX55Q8NHQ9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.943e-6■■■□□ 16.1
DDX55Q8NHQ9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.943e-6■■■□□ 16.1
DDX55Q8NHQ9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.923e-6■■■□□ 16.1
DDX55Q8NHQ9 LMBR1L-205ENST00000547670 1866 ntTSL 1 (best)20.65■□□□□ 0.93e-6■■■□□ 16.1
DDX55Q8NHQ9 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.893e-6■■■□□ 16.1
DDX55Q8NHQ9 JPT2-209ENST00000566742 593 ntTSL 420.45■□□□□ 0.862e-8■■■□□ 16.1
DDX55Q8NHQ9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.853e-6■■■□□ 16.1
Retrieved 100 of 15,504 protein–RNA pairs in 131.3 ms