Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC9.01□□□□□ -0.973e-6■■■■□ 23.1
SF3B1O75533 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)15.9■□□□□ 0.149e-7■■■■□ 23
SF3B1O75533 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.69■■■■□ 3.142e-6■■■■□ 23
SF3B1O75533 MAP7D1-202ENST00000373148 1797 ntTSL 229.29■■■□□ 2.282e-6■■■■□ 23
SF3B1O75533 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.29■■□□□ 1.642e-6■■■■□ 23
SF3B1O75533 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.552e-6■■■■□ 23
SF3B1O75533 DDX39A-215ENST00000590696 563 ntTSL 424.03■■□□□ 1.447e-10■■■■□ 23
SF3B1O75533 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.422e-6■■■■□ 23
SF3B1O75533 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.81■■□□□ 1.42e-6■■■■□ 23
SF3B1O75533 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.352e-6■■■■□ 23
SF3B1O75533 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.06■■□□□ 1.282e-6■■■■□ 23
SF3B1O75533 PRR14L-206ENST00000461722 718 ntTSL 322.92■■□□□ 1.264e-8■■■■□ 23
SF3B1O75533 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.062e-6■■■■□ 23
SF3B1O75533 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.992e-6■■■■□ 23
SF3B1O75533 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.55■□□□□ 0.882e-6■■■■□ 23
SF3B1O75533 MAP7D1-209ENST00000487131 733 ntTSL 520.3■□□□□ 0.842e-6■■■■□ 23
SF3B1O75533 SREK1-207ENST00000520058 559 ntTSL 220.07■□□□□ 0.87e-10■■■■□ 23
SF3B1O75533 LMAN2-204ENST00000504071 562 ntTSL 219.54■□□□□ 0.724e-8■■■■□ 23
SF3B1O75533 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.694e-8■■■■□ 23
SF3B1O75533 TYK2-220ENST00000534228 589 ntTSL 319.31■□□□□ 0.682e-6■■■■□ 23
SF3B1O75533 RPL13A-208ENST00000477613 796 ntTSL 519.19■□□□□ 0.662e-6■■■■□ 23
SF3B1O75533 RPL13A-206ENST00000476268 1623 ntTSL 318.83■□□□□ 0.62e-6■■■■□ 23
SF3B1O75533 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.63■□□□□ 0.577e-10■■■■□ 23
SF3B1O75533 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.554e-6■■■■□ 23
SF3B1O75533 SLC38A2-213ENST00000553252 846 ntTSL 218.35■□□□□ 0.532e-6■■■■□ 23
SF3B1O75533 LRCH4-208ENST00000490359 540 ntTSL 218.31■□□□□ 0.521e-11■■■■□ 23
SF3B1O75533 SLC38A2-210ENST00000551405 526 ntTSL 418.3■□□□□ 0.522e-6■■■■□ 23
SF3B1O75533 SREK1-214ENST00000523851 458 ntTSL 317.9■□□□□ 0.467e-10■■■■□ 23
SF3B1O75533 VDAC2-212ENST00000481876 822 ntTSL 317.79■□□□□ 0.442e-6■■■■□ 23
SF3B1O75533 DDX39A-216ENST00000591275 484 ntTSL 217.67■□□□□ 0.427e-10■■■■□ 23
SF3B1O75533 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.4■□□□□ 0.382e-6■■■■□ 23
SF3B1O75533 RPL13A-209ENST00000479992 850 ntTSL 317.37■□□□□ 0.372e-6■■■■□ 23
SF3B1O75533 RPL13A-211ENST00000486930 652 ntTSL 317.1■□□□□ 0.332e-6■■■■□ 23
SF3B1O75533 PHF10-204ENST00000480008 4285 ntTSL 1 (best)17.07■□□□□ 0.322e-6■■■■□ 23
SF3B1O75533 VDAC2-210ENST00000472137 859 ntTSL 516.96■□□□□ 0.32e-6■■■■□ 23
SF3B1O75533 VDAC2-204ENST00000344036 681 ntTSL 316.76■□□□□ 0.272e-6■■■■□ 23
SF3B1O75533 RPL13A-202ENST00000467825 660 ntTSL 516.5■□□□□ 0.232e-6■■■■□ 23
SF3B1O75533 RPL13A-204ENST00000472481 728 ntTSL 216.5■□□□□ 0.232e-6■■■■□ 23
SF3B1O75533 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)16.23■□□□□ 0.192e-6■■■■□ 23
SF3B1O75533 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.2■□□□□ 0.182e-6■■■■□ 23
SF3B1O75533 VDAC2-208ENST00000468285 850 ntTSL 216.18■□□□□ 0.182e-6■■■■□ 23
SF3B1O75533 VDAC2-211ENST00000475142 819 ntTSL 316.18■□□□□ 0.182e-6■■■■□ 23
SF3B1O75533 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.152e-6■■■■□ 23
SF3B1O75533 VDAC2-213ENST00000498394 804 ntTSL 515.4■□□□□ 0.062e-6■■■■□ 23
SF3B1O75533 RPL13A-210ENST00000484279 794 ntTSL 515.05■□□□□ -02e-6■■■■□ 23
SF3B1O75533 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC15.05■□□□□ -02e-6■■■■□ 23
SF3B1O75533 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.66□□□□□ -0.062e-6■■■■□ 23
SF3B1O75533 RPL13A-212ENST00000488946 2312 ntTSL 214.61□□□□□ -0.072e-6■■■■□ 23
SF3B1O75533 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.112e-6■■■■□ 23
SF3B1O75533 NSD2-225ENST00000514329 851 ntTSL 313.97□□□□□ -0.172e-6■■■■□ 23
SF3B1O75533 CETN3-205ENST00000522842 664 ntTSL 2 BASIC13.89□□□□□ -0.192e-6■■■■□ 23
SF3B1O75533 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC13.6□□□□□ -0.232e-6■■■■□ 23
SF3B1O75533 PRR14L-203ENST00000412743 661 ntAPPRIS ALT2 TSL 312.97□□□□□ -0.334e-8■■■■□ 23
SF3B1O75533 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.384e-8■■■■□ 23
SF3B1O75533 NSD2-210ENST00000482415 3602 ntTSL 1 (best)12.55□□□□□ -0.42e-6■■■■□ 23
SF3B1O75533 CIAO1-201ENST00000272402 3588 ntTSL 212.1□□□□□ -0.474e-8■■■■□ 23
SF3B1O75533 KIF14-201ENST00000367350 7274 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.482e-6■■■■□ 23
SF3B1O75533 PHKB-213ENST00000567200 412 ntTSL 311.93□□□□□ -0.52e-6■■■■□ 23
SF3B1O75533 ACSS2-219ENST00000490464 280 ntTSL 311.34□□□□□ -0.592e-6■■■■□ 23
SF3B1O75533 VDAC2-206ENST00000447677 738 ntTSL 311.16□□□□□ -0.622e-6■■■■□ 23
SF3B1O75533 DDX39A-220ENST00000593008 538 ntTSL 310.33□□□□□ -0.767e-10■■■■□ 23
SF3B1O75533 MPHOSPH9-218ENST00000545974 1739 ntTSL 410.31□□□□□ -0.762e-6■■■■□ 23
SF3B1O75533 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.922e-6■■■■□ 23
SF3B1O75533 SECISBP2-205ENST00000470305 5405 ntTSL 1 (best)8.9□□□□□ -0.992e-6■■■■□ 23
SF3B1O75533 NSD2-211ENST00000502425 421 ntTSL 37.28□□□□□ -1.242e-6■■■■□ 23
SF3B1O75533 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.272e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.42□□□□□ -1.382e-6■■■■□ 23
SF3B1O75533 FAM114A1-204ENST00000512889 621 ntTSL 35.67□□□□□ -1.52e-6■■■■□ 23
SF3B1O75533 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.522e-6■■■■□ 23
SF3B1O75533 GGNBP2-217ENST00000619573 2281 ntTSL 25.53□□□□□ -1.522e-6■■■■□ 23
SF3B1O75533 TRAPPC8-202ENST00000577426 437 ntTSL 55.53□□□□□ -1.522e-6■■■■□ 23
SF3B1O75533 VDAC2-205ENST00000413289 457 ntTSL 34.99□□□□□ -1.612e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.642e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-223ENST00000606704 553 ntTSL 54.52□□□□□ -1.692e-6■■■■□ 23
SF3B1O75533 SLC38A2-208ENST00000549258 4384 ntTSL 23.85□□□□□ -1.792e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-213ENST00000541603 856 ntAPPRIS ALT2 TSL 1 (best)3.76□□□□□ -1.812e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-201ENST00000302373 3097 ntTSL 1 (best)3.55□□□□□ -1.842e-6■■■■□ 23
SF3B1O75533 MPHOSPH9-217ENST00000545556 3634 ntTSL 52.94□□□□□ -1.942e-6■■■■□ 23
SF3B1O75533 AC093838.1-201ENST00000613014 469 ntBASIC2.7□□□□□ -1.982e-6■■■■□ 23
SF3B1O75533 MAT2A-206ENST00000490878 565 ntTSL 32.37□□□□□ -2.032e-6■■■■□ 23
SF3B1O75533 SREK1-210ENST00000521691 580 ntTSL 32.07□□□□□ -2.087e-10■■■■□ 23
SF3B1O75533 PHF10-203ENST00000464779 676 ntTSL 50.85□□□□□ -2.272e-6■■■■□ 23
SF3B1O75533 TBPL1-202ENST00000367869 623 ntTSL 319.79■□□□□ 0.768e-6■■■■□ 23
SF3B1O75533 TBPL1-205ENST00000457715 865 ntTSL 518.81■□□□□ 0.68e-6■■■■□ 23
SF3B1O75533 GNL3-201ENST00000394799 2041 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.278e-7■■■■□ 22.9
SF3B1O75533 GNL3-202ENST00000418458 2040 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.418e-7■■■■□ 22.9
SF3B1O75533 GNL3-211ENST00000496254 2118 ntTSL 55.83□□□□□ -1.488e-7■■■■□ 22.9
SF3B1O75533 GNL3-209ENST00000484022 668 ntTSL 24.23□□□□□ -1.738e-7■■■■□ 22.9
SF3B1O75533 PLXNA3-208ENST00000495040 421 ntTSL 529.28■■■□□ 2.283e-6■■■■□ 22.9
SF3B1O75533 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.673e-6■■■■□ 22.9
SF3B1O75533 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.663e-6■■■■□ 22.9
SF3B1O75533 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.663e-6■■■■□ 22.9
SF3B1O75533 TNK2-210ENST00000433111 580 ntTSL 425.09■■□□□ 1.613e-6■■■■□ 22.9
SF3B1O75533 TMUB1-206ENST00000488752 584 ntTSL 224.55■■□□□ 1.523e-6■■■■□ 22.9
SF3B1O75533 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.23e-6■■■■□ 22.9
SF3B1O75533 MTHFR-207ENST00000418034 1034 ntTSL 322.29■■□□□ 1.163e-6■■■■□ 22.9
SF3B1O75533 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.69■■□□□ 1.063e-6■■■■□ 22.9
SF3B1O75533 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.023e-6■■■■□ 22.9
SF3B1O75533 ARHGEF2-217ENST00000497907 764 ntTSL 321.31■■□□□ 13e-6■■■■□ 22.9
SF3B1O75533 MTHFR-219ENST00000642002 549 nt19.27■□□□□ 0.683e-6■■■■□ 22.9
Retrieved 100 of 46,956 protein–RNA pairs in 3318.6 ms