Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LMX1AQ8TE12 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LMX1AQ8TE12 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.89■□□□□ 0.93
LMX1AQ8TE12 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 KRT18P20-201ENST00000548986 1279 ntBASIC20.89■□□□□ 0.93
LMX1AQ8TE12 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LMX1AQ8TE12 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LMX1AQ8TE12 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 EEF1DP3-203ENST00000566025 782 ntBASIC20.87■□□□□ 0.93
LMX1AQ8TE12 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 AC010536.3-201ENST00000620306 533 ntBASIC20.87■□□□□ 0.93
LMX1AQ8TE12 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LMX1AQ8TE12 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 AC053503.5-201ENST00000601508 636 ntBASIC20.86■□□□□ 0.93
LMX1AQ8TE12 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LMX1AQ8TE12 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms