Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.32■□□□□ 0.84
UPK1AO00322 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
UPK1AO00322 AC135279.3-201ENST00000610945 1311 ntBASIC20.31■□□□□ 0.84
UPK1AO00322 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
UPK1AO00322 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
UPK1AO00322 AC096631.2-201ENST00000436136 790 ntBASIC20.31■□□□□ 0.84
UPK1AO00322 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.31■□□□□ 0.84
UPK1AO00322 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.31■□□□□ 0.84
UPK1AO00322 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPK1AO00322 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UPK1AO00322 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.3■□□□□ 0.84
UPK1AO00322 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.3■□□□□ 0.84
UPK1AO00322 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UPK1AO00322 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.29■□□□□ 0.84
UPK1AO00322 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
UPK1AO00322 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
UPK1AO00322 AC079089.2-201ENST00000531211 1277 ntBASIC20.29■□□□□ 0.84
UPK1AO00322 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.29■□□□□ 0.84
UPK1AO00322 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.29■□□□□ 0.84
UPK1AO00322 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.29■□□□□ 0.84
UPK1AO00322 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UPK1AO00322 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
UPK1AO00322 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.28■□□□□ 0.84
UPK1AO00322 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.28■□□□□ 0.84
UPK1AO00322 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
UPK1AO00322 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.28■□□□□ 0.84
UPK1AO00322 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
UPK1AO00322 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
UPK1AO00322 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 BX842568.3-201ENST00000418104 571 ntBASIC20.27■□□□□ 0.84
UPK1AO00322 AC010141.3-201ENST00000456659 717 ntBASIC20.27■□□□□ 0.84
UPK1AO00322 AP005435.1-201ENST00000529293 1178 ntBASIC20.27■□□□□ 0.84
UPK1AO00322 AC087239.1-201ENST00000622671 572 ntBASIC20.27■□□□□ 0.84
UPK1AO00322 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
UPK1AO00322 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
UPK1AO00322 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
UPK1AO00322 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
UPK1AO00322 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.26■□□□□ 0.83
UPK1AO00322 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.26■□□□□ 0.83
UPK1AO00322 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 PBX2P1-201ENST00000493219 1291 ntBASIC20.26■□□□□ 0.83
UPK1AO00322 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
UPK1AO00322 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
UPK1AO00322 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.25■□□□□ 0.83
UPK1AO00322 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
UPK1AO00322 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
UPK1AO00322 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
UPK1AO00322 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
UPK1AO00322 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
UPK1AO00322 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.25■□□□□ 0.83
UPK1AO00322 AC106739.1-201ENST00000617035 715 ntBASIC20.25■□□□□ 0.83
UPK1AO00322 AC110285.6-201ENST00000617652 491 ntBASIC20.25■□□□□ 0.83
UPK1AO00322 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.25■□□□□ 0.83
UPK1AO00322 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
UPK1AO00322 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms