Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 AC080038.3-201ENST00000623346 1952 ntBASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 AC016769.1-201ENST00000409132 1010 ntBASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 ESRRAP2-201ENST00000418437 1549 ntBASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC60Q8IWA6 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
CCDC60Q8IWA6 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
CCDC60Q8IWA6 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.43
CCDC60Q8IWA6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC60Q8IWA6 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC60Q8IWA6 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 AC127496.7-201ENST00000625110 1798 ntBASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
CCDC60Q8IWA6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.94■■□□□ 1.42
CCDC60Q8IWA6 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC60Q8IWA6 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC60Q8IWA6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC60Q8IWA6 AC080038.1-201ENST00000611274 1154 ntBASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms