Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.85■□□□□ 0.93
PCNAP12004 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 AC135279.3-201ENST00000610945 1311 ntBASIC20.85■□□□□ 0.93
PCNAP12004 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.85■□□□□ 0.93
PCNAP12004 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.85■□□□□ 0.93
PCNAP12004 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCNAP12004 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.85■□□□□ 0.93
PCNAP12004 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.84■□□□□ 0.93
PCNAP12004 AC010141.3-201ENST00000456659 717 ntBASIC20.84■□□□□ 0.93
PCNAP12004 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.84■□□□□ 0.93
PCNAP12004 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.84■□□□□ 0.93
PCNAP12004 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCNAP12004 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.83■□□□□ 0.93
PCNAP12004 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCNAP12004 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.83■□□□□ 0.93
PCNAP12004 FBXW4P1-201ENST00000426721 2239 ntBASIC20.83■□□□□ 0.93
PCNAP12004 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.83■□□□□ 0.93
PCNAP12004 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCNAP12004 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.83■□□□□ 0.92
PCNAP12004 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PCNAP12004 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCNAP12004 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCNAP12004 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.83■□□□□ 0.92
PCNAP12004 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCNAP12004 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
PCNAP12004 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCNAP12004 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCNAP12004 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCNAP12004 PBX2P1-201ENST00000493219 1291 ntBASIC20.82■□□□□ 0.92
PCNAP12004 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.82■□□□□ 0.92
PCNAP12004 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCNAP12004 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCNAP12004 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 OR7E47P-201ENST00000546390 1422 ntBASIC20.81■□□□□ 0.92
PCNAP12004 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PCNAP12004 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.81■□□□□ 0.92
PCNAP12004 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PCNAP12004 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCNAP12004 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.8■□□□□ 0.92
PCNAP12004 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.8■□□□□ 0.92
PCNAP12004 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.8■□□□□ 0.92
PCNAP12004 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.8■□□□□ 0.92
PCNAP12004 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.8■□□□□ 0.92
PCNAP12004 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCNAP12004 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCNAP12004 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PCNAP12004 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PCNAP12004 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.79■□□□□ 0.92
PCNAP12004 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PCNAP12004 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
PCNAP12004 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
PCNAP12004 AP005435.1-201ENST00000529293 1178 ntBASIC20.79■□□□□ 0.92
PCNAP12004 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.79■□□□□ 0.92
PCNAP12004 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PCNAP12004 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.79■□□□□ 0.92
PCNAP12004 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCNAP12004 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms