Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.22■□□□□ 0.83
CLPTM1O96005 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CLPTM1O96005 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLPTM1O96005 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.22■□□□□ 0.83
CLPTM1O96005 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLPTM1O96005 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLPTM1O96005 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLPTM1O96005 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CLPTM1O96005 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLPTM1O96005 AL451085.2-201ENST00000605085 799 ntBASIC20.21■□□□□ 0.83
CLPTM1O96005 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
CLPTM1O96005 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
CLPTM1O96005 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.21■□□□□ 0.83
CLPTM1O96005 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.21■□□□□ 0.83
CLPTM1O96005 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLPTM1O96005 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLPTM1O96005 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLPTM1O96005 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
CLPTM1O96005 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.21■□□□□ 0.83
CLPTM1O96005 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.2■□□□□ 0.82
CLPTM1O96005 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLPTM1O96005 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CLPTM1O96005 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.19■□□□□ 0.82
CLPTM1O96005 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CLPTM1O96005 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.19■□□□□ 0.82
CLPTM1O96005 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.19■□□□□ 0.82
CLPTM1O96005 AL031848.2-201ENST00000607670 837 ntBASIC20.19■□□□□ 0.82
CLPTM1O96005 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
CLPTM1O96005 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.19■□□□□ 0.82
CLPTM1O96005 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.19■□□□□ 0.82
CLPTM1O96005 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLPTM1O96005 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLPTM1O96005 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.18■□□□□ 0.82
CLPTM1O96005 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLPTM1O96005 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CLPTM1O96005 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CLPTM1O96005 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.18■□□□□ 0.82
CLPTM1O96005 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLPTM1O96005 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.17■□□□□ 0.82
CLPTM1O96005 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CLPTM1O96005 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.17■□□□□ 0.82
CLPTM1O96005 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLPTM1O96005 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLPTM1O96005 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLPTM1O96005 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.17■□□□□ 0.82
CLPTM1O96005 FEM1AP4-201ENST00000443167 1987 ntBASIC20.17■□□□□ 0.82
CLPTM1O96005 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.17■□□□□ 0.82
CLPTM1O96005 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CLPTM1O96005 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.16■□□□□ 0.82
CLPTM1O96005 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLPTM1O96005 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.16■□□□□ 0.82
CLPTM1O96005 AC120024.1-201ENST00000562672 995 ntBASIC20.16■□□□□ 0.82
CLPTM1O96005 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLPTM1O96005 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLPTM1O96005 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms