Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.361e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.57■■□□□ 1.21e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.11e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.031e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.2■□□□□ 0.981e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-212ENST00000434658 1817 ntTSL 520.99■□□□□ 0.951e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-222ENST00000621967 1901 ntTSL 219.61■□□□□ 0.731e-8■■■□□ 17.1
DDX55Q8NHQ9 FAM3A-221ENST00000612856 3995 ntTSL 211.51□□□□□ -0.571e-8■■■□□ 17.1
DDX55Q8NHQ9 MRPS6-202ENST00000477091 1061 ntTSL 521.37■■□□□ 1.014e-7■■■□□ 17.1
DDX55Q8NHQ9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.694e-7■■■□□ 17.1
DDX55Q8NHQ9 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.04■□□□□ 0.644e-7■■■□□ 17.1
DDX55Q8NHQ9 MRPS6-205ENST00000488492 909 ntTSL 57.67□□□□□ -1.184e-7■■■□□ 17.1
DDX55Q8NHQ9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.824e-7■■■□□ 17.1
DDX55Q8NHQ9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.024e-17■■■□□ 17.1
DDX55Q8NHQ9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.574e-17■■■□□ 17.1
DDX55Q8NHQ9 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC15.45■□□□□ 0.064e-17■■■□□ 17.1
DDX55Q8NHQ9 SERPINH1-202ENST00000524558 3391 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.384e-17■■■□□ 17.1
DDX55Q8NHQ9 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC14.23□□□□□ -0.133e-12■■■□□ 17.1
DDX55Q8NHQ9 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC14.07□□□□□ -0.163e-12■■■□□ 17.1
DDX55Q8NHQ9 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.223e-12■■■□□ 17.1
DDX55Q8NHQ9 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.073e-12■■■□□ 17.1
DDX55Q8NHQ9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.634e-11■■■□□ 17.1
DDX55Q8NHQ9 ARHGAP4-224ENST00000494813 1939 ntTSL 523.25■■□□□ 1.314e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-207ENST00000460996 908 ntTSL 221.95■■□□□ 1.14e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-209ENST00000466877 1080 ntTSL 1 (best)21.4■■□□□ 1.024e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC19.38■□□□□ 0.694e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC19.38■□□□□ 0.694e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-214ENST00000482485 1075 ntTSL 219.12■□□□□ 0.654e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-215ENST00000484950 873 ntTSL 217.66■□□□□ 0.424e-11■■■□□ 17.1
DDX55Q8NHQ9 NAA10-205ENST00000393712 908 ntTSL 5 BASIC15.64■□□□□ 0.094e-11■■■□□ 17.1
DDX55Q8NHQ9 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.88e-8■■■□□ 17.1
DDX55Q8NHQ9 MFSD2B-204ENST00000469562 2613 ntTSL 1 (best)16.32■□□□□ 0.28e-8■■■□□ 17.1
DDX55Q8NHQ9 MFSD2B-205ENST00000495018 1156 ntTSL 1 (best)15.29■□□□□ 0.048e-8■■■□□ 17.1
DDX55Q8NHQ9 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.038e-8■■■□□ 17.1
DDX55Q8NHQ9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.052e-7■■■□□ 17.1
DDX55Q8NHQ9 RPL41-206ENST00000552314 595 ntTSL 211.65□□□□□ -0.544e-59■■■□□ 17.1
DDX55Q8NHQ9 ATP5B-208ENST00000551182 457 ntTSL 28.24□□□□□ -1.094e-38■■■□□ 17.1
DDX55Q8NHQ9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.115e-40■■■□□ 17
DDX55Q8NHQ9 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.965e-40■■■□□ 17
DDX55Q8NHQ9 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.275e-40■■■□□ 17
DDX55Q8NHQ9 DUS1L-203ENST00000538833 1250 ntTSL 1 (best)21.53■■□□□ 1.041e-12■■■□□ 17
DDX55Q8NHQ9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.941e-12■■■□□ 17
DDX55Q8NHQ9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.811e-12■■■□□ 17
DDX55Q8NHQ9 DUS1L-210ENST00000578846 4456 ntTSL 215.02□□□□□ -0.011e-12■■■□□ 17
DDX55Q8NHQ9 MRPL38-202ENST00000410030 535 ntTSL 432.14■■■□□ 2.744e-7■■■□□ 17
DDX55Q8NHQ9 MRPL38-204ENST00000464758 752 ntTSL 327.31■■□□□ 1.964e-7■■■□□ 17
DDX55Q8NHQ9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.05■■□□□ 1.921e-16■■■□□ 17
DDX55Q8NHQ9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.866e-7■■■□□ 17
DDX55Q8NHQ9 MRPL38-216ENST00000585475 580 ntTSL 526.13■■□□□ 1.774e-7■■■□□ 17
DDX55Q8NHQ9 RPS19BP1-203ENST00000459956 852 ntTSL 225.02■■□□□ 1.66e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.62■■□□□ 1.536e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-206ENST00000478355 1525 nt24.32■■□□□ 1.486e-7■■■□□ 17
DDX55Q8NHQ9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.456e-7■■■□□ 17
DDX55Q8NHQ9 MRPL38-213ENST00000493104 1116 ntTSL 223.83■■□□□ 1.414e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-207ENST00000478519 1175 nt23.67■■□□□ 1.386e-7■■■□□ 17
DDX55Q8NHQ9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.351e-16■■■□□ 17
DDX55Q8NHQ9 HLA-G-202ENST00000376815 851 ntBASIC23.51■■□□□ 1.356e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-203ENST00000376818 1127 ntBASIC23.51■■□□□ 1.356e-7■■■□□ 17
DDX55Q8NHQ9 ZFAND2A-205ENST00000478137 557 ntTSL 323.5■■□□□ 1.356e-7■■■□□ 17
DDX55Q8NHQ9 KRT19-202ENST00000455635 641 ntTSL 323.32■■□□□ 1.328e-11■■■□□ 17
DDX55Q8NHQ9 RPS19BP1-202ENST00000420879 861 ntTSL 223.06■■□□□ 1.286e-7■■■□□ 17
DDX55Q8NHQ9 MRPL38-203ENST00000461602 880 ntTSL 322.8■■□□□ 1.244e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.66■■□□□ 1.226e-7■■■□□ 17
DDX55Q8NHQ9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC22.62■■□□□ 1.216e-7■■■□□ 17
DDX55Q8NHQ9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.077e-9■■■□□ 17
DDX55Q8NHQ9 MRPL38-214ENST00000493383 727 ntTSL 221.62■■□□□ 1.054e-7■■■□□ 17
DDX55Q8NHQ9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.016e-7■■■□□ 17
DDX55Q8NHQ9 MRPL38-209ENST00000477736 843 ntTSL 221.36■■□□□ 1.014e-7■■■□□ 17
DDX55Q8NHQ9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.977e-8■■■□□ 17
DDX55Q8NHQ9 MRPL38-215ENST00000494179 870 ntTSL 320.72■□□□□ 0.914e-7■■■□□ 17
DDX55Q8NHQ9 ATP6V0E2-205ENST00000464683 495 ntTSL 520.72■□□□□ 0.916e-7■■■□□ 17
DDX55Q8NHQ9 KRT19-205ENST00000471565 654 ntTSL 220.58■□□□□ 0.898e-11■■■□□ 17
DDX55Q8NHQ9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.862e-6■■■□□ 17
DDX55Q8NHQ9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.08■□□□□ 0.86e-7■■■□□ 17
DDX55Q8NHQ9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.02■□□□□ 0.87e-9■■■□□ 17
DDX55Q8NHQ9 CNEP1R1-210ENST00000568890 1992 ntTSL 1 (best)19.95■□□□□ 0.786e-7■■■□□ 17
DDX55Q8NHQ9 AC008738.7-201ENST00000609744 511 ntBASIC19.59■□□□□ 0.736e-7■■■□□ 17
DDX55Q8NHQ9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.666e-7■■■□□ 17
DDX55Q8NHQ9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.646e-7■■■□□ 17
DDX55Q8NHQ9 PSMD13-213ENST00000533717 670 ntTSL 218.94■□□□□ 0.626e-7■■■□□ 17
DDX55Q8NHQ9 KRT19-206ENST00000479031 427 ntTSL 218.1■□□□□ 0.498e-11■■■□□ 17
DDX55Q8NHQ9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.371e-16■■■□□ 17
DDX55Q8NHQ9 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.333e-9■■■□□ 17
DDX55Q8NHQ9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.09■□□□□ 0.336e-7■■■□□ 17
DDX55Q8NHQ9 FAM83H-202ENST00000395103 3611 ntTSL 216.96■□□□□ 0.317e-9■■■□□ 17
DDX55Q8NHQ9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.27e-9■■■□□ 17
DDX55Q8NHQ9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.157e-9■■■□□ 17
DDX55Q8NHQ9 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.96■□□□□ 0.141e-16■■■□□ 17
DDX55Q8NHQ9 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.033e-7■■■□□ 17
DDX55Q8NHQ9 LRP3-203ENST00000590278 3278 ntTSL 215.15■□□□□ 0.026e-7■■■□□ 17
DDX55Q8NHQ9 LPCAT3-203ENST00000535479 2902 ntTSL 1 (best)14.11□□□□□ -0.152e-6■■■□□ 17
DDX55Q8NHQ9 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.166e-7■■■□□ 17
DDX55Q8NHQ9 RPS19BP1-205ENST00000488602 2801 ntTSL 213.75□□□□□ -0.216e-7■■■□□ 17
DDX55Q8NHQ9 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.246e-7■■■□□ 17
DDX55Q8NHQ9 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.251e-16■■■□□ 17
DDX55Q8NHQ9 AC087289.3-202ENST00000593156 4270 ntTSL 213.05□□□□□ -0.324e-7■■■□□ 17
DDX55Q8NHQ9 HEXIM1-201ENST00000332499 3600 ntAPPRIS P1 BASIC12.9□□□□□ -0.346e-7■■■□□ 17
DDX55Q8NHQ9 CNEP1R1-205ENST00000565457 1744 ntTSL 512.56□□□□□ -0.46e-7■■■□□ 17
DDX55Q8NHQ9 TRIM26-269ENST00000480999 3114 ntTSL 212.18□□□□□ -0.466e-7■■■□□ 17
DDX55Q8NHQ9 TRIM26-268ENST00000454678 3478 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.496e-7■■■□□ 17
Retrieved 100 of 15,504 protein–RNA pairs in 200.7 ms