RNA–Protein interactions for RNA: ENST00000590278.1

LRP3-203, Transcript of LDL receptor related protein 3, humanhuman

TSL 2

Gene LRP3, Length 3,278 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP3-203ENST00000590278 NISCHQ9Y2I1 1504 aa28.92■■■□□ 2.22
LRP3-203ENST00000590278 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
LRP3-203ENST00000590278 SUPT5HO00267 1087 aaKnown RBP25.39■■□□□ 1.66
LRP3-203ENST00000590278 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
LRP3-203ENST00000590278 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
LRP3-203ENST00000590278 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.5
LRP3-203ENST00000590278 PCGF6Q9BYE7 350 aa24.39■■□□□ 1.5
LRP3-203ENST00000590278 MYO15BQ96JP2 1530 aa24.37■■□□□ 1.49
LRP3-203ENST00000590278 HRCP23327 699 aa24.31■■□□□ 1.48
LRP3-203ENST00000590278 CCDC180Q9P1Z9 1646 aa24.09■■□□□ 1.45
LRP3-203ENST00000590278 PPARGC1BQ86YN6 1023 aaKnown RBP24.08■■□□□ 1.45
LRP3-203ENST00000590278 LOC105371045A0A1W2PR82 267 aa24.04■■□□□ 1.44
LRP3-203ENST00000590278 EHMT2Q96KQ7 1210 aa23.65■■□□□ 1.38
LRP3-203ENST00000590278 FAM9AQ8IZU1 332 aaPredicted RBP23.58■■□□□ 1.37
LRP3-203ENST00000590278 DCAF1Q9Y4B6 1507 aa23.55■■□□□ 1.36
LRP3-203ENST00000590278 TRIM26Q12899 539 aaPredicted RBP23.54■■□□□ 1.36
LRP3-203ENST00000590278 TRIM41Q8WV44 630 aa23.44■■□□□ 1.34
LRP3-203ENST00000590278 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
LRP3-203ENST00000590278 RSF1Q96T23 1441 aaPredicted RBP23.15■■□□□ 1.3
LRP3-203ENST00000590278 ABCC9O60706 1549 aa23.11■■□□□ 1.29
LRP3-203ENST00000590278 ZEB1P37275 1124 aaPredicted RBP23.09■■□□□ 1.29
LRP3-203ENST00000590278 RB1CC1Q8TDY2 1594 aa22.98■■□□□ 1.27
LRP3-203ENST00000590278 TTBK1Q5TCY1 1321 aaPredicted RBP22.93■■□□□ 1.26
LRP3-203ENST00000590278 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.82■■□□□ 1.24
LRP3-203ENST00000590278 CECR2Q9BXF3 1484 aa22.78■■□□□ 1.24
LRP3-203ENST00000590278 CCER1Q8TC90 406 aaPredicted RBP22.77■■□□□ 1.24
LRP3-203ENST00000590278 SCAF1Q9H7N4 1312 aaKnown RBP22.72■■□□□ 1.23
LRP3-203ENST00000590278 MROH2BQ7Z745 1585 aa22.63■■□□□ 1.21
LRP3-203ENST00000590278 WIZO95785 1651 aa22.52■■□□□ 1.2
LRP3-203ENST00000590278 PELP1Q8IZL8 1130 aaKnown RBP22.45■■□□□ 1.18
LRP3-203ENST00000590278 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
LRP3-203ENST00000590278 DIEXFQ68CQ4 756 aaKnown RBP22.4■■□□□ 1.18
LRP3-203ENST00000590278 NEUROD1Q13562 356 aa22.38■■□□□ 1.17
LRP3-203ENST00000590278 NACADO15069 1562 aa22.37■■□□□ 1.17
LRP3-203ENST00000590278 ACIN1Q9UKV3 1341 aaKnown RBP22.34■■□□□ 1.17
LRP3-203ENST00000590278 ABCC8Q09428 1581 aa22.3■■□□□ 1.16
LRP3-203ENST00000590278 GTF3C3Q9Y5Q9 886 aa22.26■■□□□ 1.15
LRP3-203ENST00000590278 CENPBP07199 599 aaPredicted RBP22.26■■□□□ 1.15
LRP3-203ENST00000590278 CCDC88BA6NC98 1476 aa22.26■■□□□ 1.15
LRP3-203ENST00000590278 YTHDC1Q96MU7 727 aaKnown RBP22.24■■□□□ 1.15
LRP3-203ENST00000590278 RANGAP1P46060 587 aaPredicted RBP22.22■■□□□ 1.15
LRP3-203ENST00000590278 CEP162Q5TB80 1403 aa22.21■■□□□ 1.15
LRP3-203ENST00000590278 SOGA1O94964 1423 aa22.2■■□□□ 1.14
LRP3-203ENST00000590278 BAZ1AQ9NRL2 1556 aaPredicted RBP22.2■■□□□ 1.14
LRP3-203ENST00000590278 HNRNPUL2Q1KMD3 747 aaKnown RBP22.17■■□□□ 1.14
LRP3-203ENST00000590278 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
LRP3-203ENST00000590278 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.13
LRP3-203ENST00000590278 RUSC2Q8N2Y8 1516 aa22.07■■□□□ 1.12
LRP3-203ENST00000590278 ZNF316A6NFI3 1004 aaPredicted RBP22.04■■□□□ 1.12
LRP3-203ENST00000590278 TNIKQ9UKE5 1360 aa22.02■■□□□ 1.12
LRP3-203ENST00000590278 TOP2AP11388 1531 aaKnown RBP22■■□□□ 1.11
LRP3-203ENST00000590278 EIF4G1Q04637 1599 aaKnown RBP22■■□□□ 1.11
LRP3-203ENST00000590278 WRNQ14191 1432 aaPredicted RBP eCLIP21.99■■□□□ 1.11
LRP3-203ENST00000590278 APLP2Q06481 763 aa21.98■■□□□ 1.11
LRP3-203ENST00000590278 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
LRP3-203ENST00000590278 SMARCA4P51532 1647 aa21.92■■□□□ 1.1
LRP3-203ENST00000590278 MIER1Q8N108 512 aa21.88■■□□□ 1.09
LRP3-203ENST00000590278 GOLGA3Q08378 1498 aa21.86■■□□□ 1.09
LRP3-203ENST00000590278 EEA1Q15075 1411 aa21.83■■□□□ 1.08
LRP3-203ENST00000590278 CLIP1P30622 1438 aa21.76■■□□□ 1.07
LRP3-203ENST00000590278 CEP164Q9UPV0 1460 aa21.67■■□□□ 1.06
LRP3-203ENST00000590278 ITGAEP38570 1179 aa21.6■■□□□ 1.05
LRP3-203ENST00000590278 UNC13AQ9UPW8 1703 aa21.59■■□□□ 1.05
LRP3-203ENST00000590278 VPS8Q8N3P4 1428 aa21.58■■□□□ 1.05
LRP3-203ENST00000590278 SYNJ1O43426 1573 aa21.58■■□□□ 1.04
LRP3-203ENST00000590278 RAPGEF2Q9Y4G8 1499 aa21.58■■□□□ 1.04
LRP3-203ENST00000590278 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
LRP3-203ENST00000590278 KANK4Q5T7N3 995 aaPredicted RBP21.45■■□□□ 1.02
LRP3-203ENST00000590278 KIF21BO75037 1637 aa21.43■■□□□ 1.02
LRP3-203ENST00000590278 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.01
LRP3-203ENST00000590278 BICRAQ9NZM4 1560 aa21.38■■□□□ 1.01
LRP3-203ENST00000590278 DHX57Q6P158 1386 aaKnown RBP21.34■■□□□ 1.01
LRP3-203ENST00000590278 MYT1Q01538 1121 aa21.33■■□□□ 1.01
LRP3-203ENST00000590278 ATP1B4Q9UN42 357 aaPredicted RBP21.28■■□□□ 1
LRP3-203ENST00000590278 SUPT16HQ9Y5B9 1047 aaKnown RBP21.23■□□□□ 0.99
LRP3-203ENST00000590278 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
LRP3-203ENST00000590278 CLSPNQ9HAW4 1339 aa21.2■□□□□ 0.98
LRP3-203ENST00000590278 ARAP1Q96P48 1450 aa21.19■□□□□ 0.98
LRP3-203ENST00000590278 BCANQ96GW7 911 aa21.19■□□□□ 0.98
LRP3-203ENST00000590278 KCNH8Q96L42 1107 aa21.18■□□□□ 0.98
LRP3-203ENST00000590278 FAM50AQ14320 339 aaKnown RBP21.16■□□□□ 0.98
LRP3-203ENST00000590278 TOP2BQ02880 1626 aa21.14■□□□□ 0.98
LRP3-203ENST00000590278 P3H3Q8IVL6 736 aa21.14■□□□□ 0.98
LRP3-203ENST00000590278 CCNB3Q8WWL7 1395 aa21.14■□□□□ 0.97
LRP3-203ENST00000590278 KIF27Q86VH2 1401 aa21.11■□□□□ 0.97
LRP3-203ENST00000590278 PRXQ9BXM0 1461 aa21.11■□□□□ 0.97
LRP3-203ENST00000590278 HIRIP3Q9BW71 556 aaPredicted RBP21.11■□□□□ 0.97
LRP3-203ENST00000590278 DDX10Q13206 875 aaKnown RBP21.1■□□□□ 0.97
LRP3-203ENST00000590278 SIN3AQ96ST3 1273 aa21.07■□□□□ 0.96
LRP3-203ENST00000590278 RAB3GAP2Q9H2M9 1393 aa21.05■□□□□ 0.96
LRP3-203ENST00000590278 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
LRP3-203ENST00000590278 RRBP1Q9P2E9 1410 aaKnown RBP21.02■□□□□ 0.96
LRP3-203ENST00000590278 CUX1P39880 1505 aa21■□□□□ 0.95
LRP3-203ENST00000590278 ARHGAP35Q9NRY4 1499 aa20.99■□□□□ 0.95
LRP3-203ENST00000590278 FKBP8Q14318 412 aa20.96■□□□□ 0.95
LRP3-203ENST00000590278 TSHZ2Q9NRE2 1034 aa20.95■□□□□ 0.94
LRP3-203ENST00000590278 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
LRP3-203ENST00000590278 CUX2O14529 1486 aa20.93■□□□□ 0.94
LRP3-203ENST00000590278 TRIM52Q96A61 297 aa20.93■□□□□ 0.94
LRP3-203ENST00000590278 SETD5Q9C0A6 1442 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms