RNA–Protein interactions for RNA: ENST00000261407.8

LPCAT3-201, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPCAT3, Length 2,268 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-201ENST00000261407 NISCHQ9Y2I1 1504 aa40.48■■■■■ 4.07
LPCAT3-201ENST00000261407 SHROOM4Q9ULL8 1493 aa34.54■■■■□ 3.12
LPCAT3-201ENST00000261407 CCDC180Q9P1Z9 1646 aa34.39■■■■□ 3.1
LPCAT3-201ENST00000261407 ZCCHC6Q5VYS8 1495 aaKnown RBP34.19■■■■□ 3.06
LPCAT3-201ENST00000261407 DCAF8L2P0C7V8 631 aa33.79■■■■□ 3
LPCAT3-201ENST00000261407 SUPT5HO00267 1087 aaKnown RBP33.76■■■■□ 3
LPCAT3-201ENST00000261407 DCAF1Q9Y4B6 1507 aa33.12■■■□□ 2.89
LPCAT3-201ENST00000261407 CHIC1Q5VXU3 224 aa32.69■■■□□ 2.82
LPCAT3-201ENST00000261407 MYO15BQ96JP2 1530 aa32.55■■■□□ 2.8
LPCAT3-201ENST00000261407 SCRIBQ14160 1630 aa32.36■■■□□ 2.77
LPCAT3-201ENST00000261407 ABCC9O60706 1549 aa32.21■■■□□ 2.75
LPCAT3-201ENST00000261407 RSF1Q96T23 1441 aaPredicted RBP32.01■■■□□ 2.72
LPCAT3-201ENST00000261407 NACADO15069 1562 aa31.89■■■□□ 2.69
LPCAT3-201ENST00000261407 LOC105371045A0A1W2PR82 267 aa31.8■■■□□ 2.68
LPCAT3-201ENST00000261407 CECR2Q9BXF3 1484 aa31.69■■■□□ 2.66
LPCAT3-201ENST00000261407 RB1CC1Q8TDY2 1594 aa31.64■■■□□ 2.66
LPCAT3-201ENST00000261407 MROH2BQ7Z745 1585 aa31.53■■■□□ 2.64
LPCAT3-201ENST00000261407 PCGF6Q9BYE7 350 aa31.51■■■□□ 2.64
LPCAT3-201ENST00000261407 TRIM41Q8WV44 630 aa31.4■■■□□ 2.62
LPCAT3-201ENST00000261407 WIZO95785 1651 aa31.34■■■□□ 2.61
LPCAT3-201ENST00000261407 HRCP23327 699 aa31.29■■■□□ 2.6
LPCAT3-201ENST00000261407 FAM9AQ8IZU1 332 aaPredicted RBP31.23■■■□□ 2.59
LPCAT3-201ENST00000261407 BAZ1AQ9NRL2 1556 aaPredicted RBP31.06■■■□□ 2.56
LPCAT3-201ENST00000261407 EHMT2Q96KQ7 1210 aa31.04■■■□□ 2.56
LPCAT3-201ENST00000261407 UNC13AQ9UPW8 1703 aa31.01■■■□□ 2.56
LPCAT3-201ENST00000261407 SMARCA4P51532 1647 aa30.86■■■□□ 2.53
LPCAT3-201ENST00000261407 TRIM26Q12899 539 aaPredicted RBP30.86■■■□□ 2.53
LPCAT3-201ENST00000261407 PABPN1Q86U42 306 aaKnown RBP eCLIP30.86■■■□□ 2.53
LPCAT3-201ENST00000261407 PPARGC1BQ86YN6 1023 aaKnown RBP30.84■■■□□ 2.53
LPCAT3-201ENST00000261407 EIF4G1Q04637 1599 aaKnown RBP30.77■■■□□ 2.52
LPCAT3-201ENST00000261407 TOP2AP11388 1531 aaKnown RBP30.76■■■□□ 2.51
LPCAT3-201ENST00000261407 CCDC88BA6NC98 1476 aa30.71■■■□□ 2.51
LPCAT3-201ENST00000261407 BICRAQ9NZM4 1560 aa30.66■■■□□ 2.5
LPCAT3-201ENST00000261407 SMARCA2P51531 1590 aa30.63■■■□□ 2.49
LPCAT3-201ENST00000261407 ABCC8Q09428 1581 aa30.61■■■□□ 2.49
LPCAT3-201ENST00000261407 SOGA1O94964 1423 aa30.3■■■□□ 2.44
LPCAT3-201ENST00000261407 PEG3Q9GZU2 1588 aa30.23■■■□□ 2.43
LPCAT3-201ENST00000261407 RUSC2Q8N2Y8 1516 aa30.18■■■□□ 2.42
LPCAT3-201ENST00000261407 ATAD2BQ9ULI0 1458 aa30.15■■■□□ 2.42
LPCAT3-201ENST00000261407 CSRNP3Q8WYN3 585 aa30.06■■■□□ 2.4
LPCAT3-201ENST00000261407 WRNQ14191 1432 aaPredicted RBP eCLIP30.05■■■□□ 2.4
LPCAT3-201ENST00000261407 BAZ1BQ9UIG0 1483 aaKnown RBP30.04■■■□□ 2.4
LPCAT3-201ENST00000261407 CEP162Q5TB80 1403 aa29.99■■■□□ 2.39
LPCAT3-201ENST00000261407 ZEB1P37275 1124 aaPredicted RBP29.98■■■□□ 2.39
LPCAT3-201ENST00000261407 TTBK1Q5TCY1 1321 aaPredicted RBP29.96■■■□□ 2.39
LPCAT3-201ENST00000261407 UBTFP17480 764 aaKnown RBP29.95■■■□□ 2.39
LPCAT3-201ENST00000261407 SYNJ1O43426 1573 aa29.93■■■□□ 2.38
LPCAT3-201ENST00000261407 TNIKQ9UKE5 1360 aa29.93■■■□□ 2.38
LPCAT3-201ENST00000261407 EEA1Q15075 1411 aa29.92■■■□□ 2.38
LPCAT3-201ENST00000261407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.79■■■□□ 2.36
LPCAT3-201ENST00000261407 GOLGA3Q08378 1498 aa29.77■■■□□ 2.36
LPCAT3-201ENST00000261407 CEP164Q9UPV0 1460 aa29.62■■■□□ 2.33
LPCAT3-201ENST00000261407 CCER1Q8TC90 406 aaPredicted RBP29.61■■■□□ 2.33
LPCAT3-201ENST00000261407 NCAPD3P42695 1498 aa29.56■■■□□ 2.32
LPCAT3-201ENST00000261407 KIF21BO75037 1637 aa29.55■■■□□ 2.32
LPCAT3-201ENST00000261407 RAPGEF2Q9Y4G8 1499 aa29.54■■■□□ 2.32
LPCAT3-201ENST00000261407 TOP2BQ02880 1626 aa29.52■■■□□ 2.32
LPCAT3-201ENST00000261407 RANGAP1P46060 587 aaPredicted RBP29.52■■■□□ 2.32
LPCAT3-201ENST00000261407 HMGXB3Q12766 1538 aa29.49■■■□□ 2.31
LPCAT3-201ENST00000261407 CLIP1P30622 1438 aa29.47■■■□□ 2.31
LPCAT3-201ENST00000261407 BIVM-ERCC5R4GMW8 1640 aa29.39■■■□□ 2.3
LPCAT3-201ENST00000261407 CUX1P39880 1505 aa29.34■■■□□ 2.29
LPCAT3-201ENST00000261407 VPS8Q8N3P4 1428 aa29.29■■■□□ 2.28
LPCAT3-201ENST00000261407 CFTRP13569 1480 aa29.29■■■□□ 2.28
LPCAT3-201ENST00000261407 PRXQ9BXM0 1461 aa29.21■■■□□ 2.27
LPCAT3-201ENST00000261407 HNRNPUL2Q1KMD3 747 aaKnown RBP29.2■■■□□ 2.27
LPCAT3-201ENST00000261407 APLP2Q06481 763 aa29.15■■■□□ 2.26
LPCAT3-201ENST00000261407 ERICH3Q5RHP9 1530 aa29.11■■■□□ 2.25
LPCAT3-201ENST00000261407 KIF27Q86VH2 1401 aa29.11■■■□□ 2.25
LPCAT3-201ENST00000261407 ARAP1Q96P48 1450 aa29.04■■■□□ 2.24
LPCAT3-201ENST00000261407 CADPSQ9ULU8 1353 aa29.02■■■□□ 2.24
LPCAT3-201ENST00000261407 KANK4Q5T7N3 995 aaPredicted RBP28.96■■■□□ 2.23
LPCAT3-201ENST00000261407 CC2D2AQ9P2K1 1620 aa28.96■■■□□ 2.23
LPCAT3-201ENST00000261407 PRDM2Q13029 1718 aa28.92■■■□□ 2.22
LPCAT3-201ENST00000261407 CUX2O14529 1486 aa28.92■■■□□ 2.22
LPCAT3-201ENST00000261407 DIEXFQ68CQ4 756 aaKnown RBP28.91■■■□□ 2.22
LPCAT3-201ENST00000261407 IGF1RP08069 1367 aa28.88■■■□□ 2.21
LPCAT3-201ENST00000261407 FGD5Q6ZNL6 1462 aa28.84■■■□□ 2.21
LPCAT3-201ENST00000261407 ARHGAP35Q9NRY4 1499 aa28.83■■■□□ 2.21
LPCAT3-201ENST00000261407 SCAF1Q9H7N4 1312 aaKnown RBP28.76■■■□□ 2.19
LPCAT3-201ENST00000261407 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
LPCAT3-201ENST00000261407 CARMIL1Q5VZK9 1371 aa28.73■■■□□ 2.19
LPCAT3-201ENST00000261407 ZNF316A6NFI3 1004 aaPredicted RBP28.73■■■□□ 2.19
LPCAT3-201ENST00000261407 NESP48681 1621 aa28.69■■■□□ 2.18
LPCAT3-201ENST00000261407 RAD54L2Q9Y4B4 1467 aa28.64■■■□□ 2.18
LPCAT3-201ENST00000261407 RRBP1Q9P2E9 1410 aaKnown RBP28.58■■■□□ 2.17
LPCAT3-201ENST00000261407 P3H3Q8IVL6 736 aa28.57■■■□□ 2.16
LPCAT3-201ENST00000261407 NEUROD1Q13562 356 aa28.56■■■□□ 2.16
LPCAT3-201ENST00000261407 DHX57Q6P158 1386 aaKnown RBP28.54■■■□□ 2.16
LPCAT3-201ENST00000261407 ITGAEP38570 1179 aa28.54■■■□□ 2.16
LPCAT3-201ENST00000261407 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
LPCAT3-201ENST00000261407 POLA1P09884 1462 aaPredicted RBP28.52■■■□□ 2.16
LPCAT3-201ENST00000261407 DNAJC5BQ9UF47 199 aa28.52■■■□□ 2.16
LPCAT3-201ENST00000261407 DNMBPQ6XZF7 1577 aa28.51■■■□□ 2.16
LPCAT3-201ENST00000261407 ACIN1Q9UKV3 1341 aaKnown RBP28.5■■■□□ 2.15
LPCAT3-201ENST00000261407 CCNB3Q8WWL7 1395 aa28.5■■■□□ 2.15
LPCAT3-201ENST00000261407 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.15
LPCAT3-201ENST00000261407 TIAM1Q13009 1591 aa28.42■■■□□ 2.14
LPCAT3-201ENST00000261407 ATP1B4Q9UN42 357 aaPredicted RBP28.4■■■□□ 2.14
LPCAT3-201ENST00000261407 MIER1Q8N108 512 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms