RNA–Protein interactions for RNA: ENST00000535479.5

LPCAT3-203, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 2,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-203ENST00000535479 NISCHQ9Y2I1 1504 aa27.29■■□□□ 1.96
LPCAT3-203ENST00000535479 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
LPCAT3-203ENST00000535479 SUPT5HO00267 1087 aaKnown RBP24.4■■□□□ 1.5
LPCAT3-203ENST00000535479 DCAF8L2P0C7V8 631 aa23.96■■□□□ 1.43
LPCAT3-203ENST00000535479 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
LPCAT3-203ENST00000535479 PCGF6Q9BYE7 350 aa23.42■■□□□ 1.34
LPCAT3-203ENST00000535479 PPARGC1BQ86YN6 1023 aaKnown RBP23.36■■□□□ 1.33
LPCAT3-203ENST00000535479 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
LPCAT3-203ENST00000535479 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
LPCAT3-203ENST00000535479 HRCP23327 699 aa23.14■■□□□ 1.29
LPCAT3-203ENST00000535479 EHMT2Q96KQ7 1210 aa23.07■■□□□ 1.28
LPCAT3-203ENST00000535479 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
LPCAT3-203ENST00000535479 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
LPCAT3-203ENST00000535479 CCDC180Q9P1Z9 1646 aa22.48■■□□□ 1.19
LPCAT3-203ENST00000535479 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
LPCAT3-203ENST00000535479 TTBK1Q5TCY1 1321 aaPredicted RBP22.29■■□□□ 1.16
LPCAT3-203ENST00000535479 TRIM41Q8WV44 630 aa22.29■■□□□ 1.16
LPCAT3-203ENST00000535479 DCAF1Q9Y4B6 1507 aa22.18■■□□□ 1.14
LPCAT3-203ENST00000535479 SCRIBQ14160 1630 aa22.09■■□□□ 1.13
LPCAT3-203ENST00000535479 RSF1Q96T23 1441 aaPredicted RBP21.96■■□□□ 1.11
LPCAT3-203ENST00000535479 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.95■■□□□ 1.1
LPCAT3-203ENST00000535479 RB1CC1Q8TDY2 1594 aa21.9■■□□□ 1.1
LPCAT3-203ENST00000535479 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
LPCAT3-203ENST00000535479 ABCC9O60706 1549 aa21.78■■□□□ 1.08
LPCAT3-203ENST00000535479 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
LPCAT3-203ENST00000535479 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
LPCAT3-203ENST00000535479 ZEB1P37275 1124 aaPredicted RBP21.62■■□□□ 1.05
LPCAT3-203ENST00000535479 MROH2BQ7Z745 1585 aa21.54■■□□□ 1.04
LPCAT3-203ENST00000535479 RANGAP1P46060 587 aaPredicted RBP21.53■■□□□ 1.04
LPCAT3-203ENST00000535479 NEUROD1Q13562 356 aa21.49■■□□□ 1.03
LPCAT3-203ENST00000535479 WIZO95785 1651 aa21.45■■□□□ 1.03
LPCAT3-203ENST00000535479 YTHDC1Q96MU7 727 aaKnown RBP21.44■■□□□ 1.02
LPCAT3-203ENST00000535479 UBTFP17480 764 aaKnown RBP21.35■■□□□ 1.01
LPCAT3-203ENST00000535479 ABCC8Q09428 1581 aa21.33■■□□□ 1.01
LPCAT3-203ENST00000535479 DIEXFQ68CQ4 756 aaKnown RBP21.33■■□□□ 1.01
LPCAT3-203ENST00000535479 GTF3C3Q9Y5Q9 886 aa21.32■■□□□ 1
LPCAT3-203ENST00000535479 HNRNPUL2Q1KMD3 747 aaKnown RBP21.28■■□□□ 1
LPCAT3-203ENST00000535479 PABPN1Q86U42 306 aaKnown RBP eCLIP21.27■■□□□ 1
LPCAT3-203ENST00000535479 ACIN1Q9UKV3 1341 aaKnown RBP21.25■□□□□ 0.99
LPCAT3-203ENST00000535479 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
LPCAT3-203ENST00000535479 SOGA1O94964 1423 aa21.22■□□□□ 0.99
LPCAT3-203ENST00000535479 RUSC2Q8N2Y8 1516 aa21.18■□□□□ 0.98
LPCAT3-203ENST00000535479 CEP162Q5TB80 1403 aa21.08■□□□□ 0.96
LPCAT3-203ENST00000535479 CSRNP3Q8WYN3 585 aa21■□□□□ 0.95
LPCAT3-203ENST00000535479 MIER1Q8N108 512 aa20.97■□□□□ 0.95
LPCAT3-203ENST00000535479 CENPBP07199 599 aaPredicted RBP20.95■□□□□ 0.94
LPCAT3-203ENST00000535479 PELP1Q8IZL8 1130 aaKnown RBP20.92■□□□□ 0.94
LPCAT3-203ENST00000535479 NACADO15069 1562 aa20.91■□□□□ 0.94
LPCAT3-203ENST00000535479 ZNF316A6NFI3 1004 aaPredicted RBP20.91■□□□□ 0.94
LPCAT3-203ENST00000535479 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
LPCAT3-203ENST00000535479 EIF4G1Q04637 1599 aaKnown RBP20.82■□□□□ 0.92
LPCAT3-203ENST00000535479 ITGAEP38570 1179 aa20.79■□□□□ 0.92
LPCAT3-203ENST00000535479 SMARCA2P51531 1590 aa20.77■□□□□ 0.91
LPCAT3-203ENST00000535479 TNIKQ9UKE5 1360 aa20.76■□□□□ 0.91
LPCAT3-203ENST00000535479 APLP2Q06481 763 aa20.73■□□□□ 0.91
LPCAT3-203ENST00000535479 TOP2AP11388 1531 aaKnown RBP20.72■□□□□ 0.91
LPCAT3-203ENST00000535479 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
LPCAT3-203ENST00000535479 WRNQ14191 1432 aaPredicted RBP eCLIP20.67■□□□□ 0.9
LPCAT3-203ENST00000535479 CLIP1P30622 1438 aa20.61■□□□□ 0.89
LPCAT3-203ENST00000535479 GOLGA3Q08378 1498 aa20.6■□□□□ 0.89
LPCAT3-203ENST00000535479 KANK4Q5T7N3 995 aaPredicted RBP20.57■□□□□ 0.88
LPCAT3-203ENST00000535479 RAPGEF2Q9Y4G8 1499 aa20.56■□□□□ 0.88
LPCAT3-203ENST00000535479 SYNJ1O43426 1573 aa20.52■□□□□ 0.88
LPCAT3-203ENST00000535479 KCNH8Q96L42 1107 aa20.52■□□□□ 0.88
LPCAT3-203ENST00000535479 UNC13AQ9UPW8 1703 aa20.49■□□□□ 0.87
LPCAT3-203ENST00000535479 HIRIP3Q9BW71 556 aaPredicted RBP20.45■□□□□ 0.86
LPCAT3-203ENST00000535479 BCANQ96GW7 911 aa20.45■□□□□ 0.86
LPCAT3-203ENST00000535479 ATP1B4Q9UN42 357 aaPredicted RBP20.42■□□□□ 0.86
LPCAT3-203ENST00000535479 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
LPCAT3-203ENST00000535479 VPS8Q8N3P4 1428 aa20.37■□□□□ 0.85
LPCAT3-203ENST00000535479 P3H3Q8IVL6 736 aa20.37■□□□□ 0.85
LPCAT3-203ENST00000535479 EEA1Q15075 1411 aa20.35■□□□□ 0.85
LPCAT3-203ENST00000535479 KIF21BO75037 1637 aa20.29■□□□□ 0.84
LPCAT3-203ENST00000535479 DHX57Q6P158 1386 aaKnown RBP20.28■□□□□ 0.84
LPCAT3-203ENST00000535479 BICRAQ9NZM4 1560 aa20.27■□□□□ 0.83
LPCAT3-203ENST00000535479 SUPT16HQ9Y5B9 1047 aaKnown RBP20.26■□□□□ 0.83
LPCAT3-203ENST00000535479 BAZ1BQ9UIG0 1483 aaKnown RBP20.25■□□□□ 0.83
LPCAT3-203ENST00000535479 SIN3AQ96ST3 1273 aa20.24■□□□□ 0.83
LPCAT3-203ENST00000535479 ATAD2BQ9ULI0 1458 aa20.21■□□□□ 0.83
LPCAT3-203ENST00000535479 FAM50AQ14320 339 aaKnown RBP20.2■□□□□ 0.82
LPCAT3-203ENST00000535479 DDX10Q13206 875 aaKnown RBP20.19■□□□□ 0.82
LPCAT3-203ENST00000535479 ARAP1Q96P48 1450 aa20.16■□□□□ 0.82
LPCAT3-203ENST00000535479 TRIM52Q96A61 297 aa20.1■□□□□ 0.81
LPCAT3-203ENST00000535479 FKBP8Q14318 412 aa20.03■□□□□ 0.8
LPCAT3-203ENST00000535479 TSHZ2Q9NRE2 1034 aa20.03■□□□□ 0.8
LPCAT3-203ENST00000535479 RAB3GAP2Q9H2M9 1393 aa20.01■□□□□ 0.79
LPCAT3-203ENST00000535479 CCNB3Q8WWL7 1395 aa20■□□□□ 0.79
LPCAT3-203ENST00000535479 CNGB1Q14028 1251 aaPredicted RBP19.96■□□□□ 0.79
LPCAT3-203ENST00000535479 IRX6P78412 446 aaPredicted RBP19.96■□□□□ 0.79
LPCAT3-203ENST00000535479 CUX1P39880 1505 aa19.94■□□□□ 0.78
LPCAT3-203ENST00000535479 ARID3CA6NKF2 412 aa19.93■□□□□ 0.78
LPCAT3-203ENST00000535479 PRXQ9BXM0 1461 aa19.93■□□□□ 0.78
LPCAT3-203ENST00000535479 TOP2BQ02880 1626 aa19.93■□□□□ 0.78
LPCAT3-203ENST00000535479 ARHGAP35Q9NRY4 1499 aa19.92■□□□□ 0.78
LPCAT3-203ENST00000535479 SENP3-EIF4A1A0A087X0R7 540 aa19.9■□□□□ 0.78
LPCAT3-203ENST00000535479 KIF27Q86VH2 1401 aa19.88■□□□□ 0.77
LPCAT3-203ENST00000535479 PHLDB1Q86UU1 1377 aa19.87■□□□□ 0.77
LPCAT3-203ENST00000535479 PEG3Q9GZU2 1588 aa19.86■□□□□ 0.77
LPCAT3-203ENST00000535479 CUX2O14529 1486 aa19.86■□□□□ 0.77
LPCAT3-203ENST00000535479 WDR97A6NE52 1622 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms