RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 NISCHQ9Y2I1 1504 aa21.07■□□□□ 0.96
FAM3A-221ENST00000612856 DCAF8L2P0C7V8 631 aa20.5■□□□□ 0.87
FAM3A-221ENST00000612856 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
FAM3A-221ENST00000612856 SUPT5HO00267 1087 aaKnown RBP18.92■□□□□ 0.62
FAM3A-221ENST00000612856 EHMT2Q96KQ7 1210 aa18.46■□□□□ 0.55
FAM3A-221ENST00000612856 ABCC9O60706 1549 aa17.92■□□□□ 0.46
FAM3A-221ENST00000612856 FAM9AQ8IZU1 332 aaPredicted RBP17.89■□□□□ 0.46
FAM3A-221ENST00000612856 PABPN1Q86U42 306 aaKnown RBP eCLIP17.79■□□□□ 0.44
FAM3A-221ENST00000612856 RANGAP1P46060 587 aaPredicted RBP17.7■□□□□ 0.42
FAM3A-221ENST00000612856 ZCCHC6Q5VYS8 1495 aaKnown RBP17.65■□□□□ 0.42
FAM3A-221ENST00000612856 CCDC180Q9P1Z9 1646 aa17.62■□□□□ 0.41
FAM3A-221ENST00000612856 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
FAM3A-221ENST00000612856 PCGF6Q9BYE7 350 aa17.41■□□□□ 0.38
FAM3A-221ENST00000612856 PPARGC1BQ86YN6 1023 aaKnown RBP17.34■□□□□ 0.37
FAM3A-221ENST00000612856 HRCP23327 699 aa17.31■□□□□ 0.36
FAM3A-221ENST00000612856 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
FAM3A-221ENST00000612856 CHIC1Q5VXU3 224 aa17.23■□□□□ 0.35
FAM3A-221ENST00000612856 ATP1B4Q9UN42 357 aaPredicted RBP17.22■□□□□ 0.35
FAM3A-221ENST00000612856 PELP1Q8IZL8 1130 aaKnown RBP17.21■□□□□ 0.35
FAM3A-221ENST00000612856 SCRIBQ14160 1630 aa17.15■□□□□ 0.34
FAM3A-221ENST00000612856 UBTFP17480 764 aaKnown RBP17.07■□□□□ 0.32
FAM3A-221ENST00000612856 LOC105371045A0A1W2PR82 267 aa17.04■□□□□ 0.32
FAM3A-221ENST00000612856 APLP2Q06481 763 aa17■□□□□ 0.31
FAM3A-221ENST00000612856 DCAF1Q9Y4B6 1507 aa16.87■□□□□ 0.29
FAM3A-221ENST00000612856 MYO15BQ96JP2 1530 aa16.85■□□□□ 0.29
FAM3A-221ENST00000612856 RSF1Q96T23 1441 aaPredicted RBP16.73■□□□□ 0.27
FAM3A-221ENST00000612856 CECR2Q9BXF3 1484 aa16.72■□□□□ 0.27
FAM3A-221ENST00000612856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.71■□□□□ 0.27
FAM3A-221ENST00000612856 HNRNPUL2Q1KMD3 747 aaKnown RBP16.71■□□□□ 0.27
FAM3A-221ENST00000612856 FBLN2P98095 1184 aa16.71■□□□□ 0.27
FAM3A-221ENST00000612856 MYT1Q01538 1121 aa16.62■□□□□ 0.25
FAM3A-221ENST00000612856 NACADO15069 1562 aa16.62■□□□□ 0.25
FAM3A-221ENST00000612856 ITGAEP38570 1179 aa16.61■□□□□ 0.25
FAM3A-221ENST00000612856 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
FAM3A-221ENST00000612856 RB1CC1Q8TDY2 1594 aa16.54■□□□□ 0.24
FAM3A-221ENST00000612856 ARID3CA6NKF2 412 aa16.53■□□□□ 0.24
FAM3A-221ENST00000612856 MROH2BQ7Z745 1585 aa16.51■□□□□ 0.23
FAM3A-221ENST00000612856 MYT1LQ9UL68 1186 aa16.49■□□□□ 0.23
FAM3A-221ENST00000612856 P3H3Q8IVL6 736 aa16.43■□□□□ 0.22
FAM3A-221ENST00000612856 WIZO95785 1651 aa16.37■□□□□ 0.21
FAM3A-221ENST00000612856 TRIM26Q12899 539 aaPredicted RBP16.36■□□□□ 0.21
FAM3A-221ENST00000612856 CENPBP07199 599 aaPredicted RBP16.34■□□□□ 0.21
FAM3A-221ENST00000612856 ZEB1P37275 1124 aaPredicted RBP16.34■□□□□ 0.21
FAM3A-221ENST00000612856 GTF3C3Q9Y5Q9 886 aa16.33■□□□□ 0.21
FAM3A-221ENST00000612856 YTHDC1Q96MU7 727 aaKnown RBP16.33■□□□□ 0.2
FAM3A-221ENST00000612856 CCER1Q8TC90 406 aaPredicted RBP16.31■□□□□ 0.2
FAM3A-221ENST00000612856 BAZ1AQ9NRL2 1556 aaPredicted RBP16.21■□□□□ 0.19
FAM3A-221ENST00000612856 NEUROD1Q13562 356 aa16.18■□□□□ 0.18
FAM3A-221ENST00000612856 ACIN1Q9UKV3 1341 aaKnown RBP16.18■□□□□ 0.18
FAM3A-221ENST00000612856 CNGB1Q14028 1251 aaPredicted RBP16.14■□□□□ 0.17
FAM3A-221ENST00000612856 CCDC88BA6NC98 1476 aa16.12■□□□□ 0.17
FAM3A-221ENST00000612856 ABCC8Q09428 1581 aa16.12■□□□□ 0.17
FAM3A-221ENST00000612856 FAM50AQ14320 339 aaKnown RBP16.08■□□□□ 0.16
FAM3A-221ENST00000612856 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
FAM3A-221ENST00000612856 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
FAM3A-221ENST00000612856 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
FAM3A-221ENST00000612856 POLR3GLQ9BT43 218 aa16.01■□□□□ 0.15
FAM3A-221ENST00000612856 DIEXFQ68CQ4 756 aaKnown RBP16■□□□□ 0.15
FAM3A-221ENST00000612856 SOGA1O94964 1423 aa15.99■□□□□ 0.15
FAM3A-221ENST00000612856 BAZ1BQ9UIG0 1483 aaKnown RBP15.96■□□□□ 0.15
FAM3A-221ENST00000612856 UNC13AQ9UPW8 1703 aa15.96■□□□□ 0.15
FAM3A-221ENST00000612856 TOP2AP11388 1531 aaKnown RBP15.96■□□□□ 0.14
FAM3A-221ENST00000612856 ZNF777Q9ULD5 760 aaPredicted RBP15.95■□□□□ 0.14
FAM3A-221ENST00000612856 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
FAM3A-221ENST00000612856 CHMP7Q8WUX9 453 aaPredicted RBP15.9■□□□□ 0.14
FAM3A-221ENST00000612856 RUSC2Q8N2Y8 1516 aa15.89■□□□□ 0.13
FAM3A-221ENST00000612856 SMARCA2P51531 1590 aa15.88■□□□□ 0.13
FAM3A-221ENST00000612856 WRNQ14191 1432 aaPredicted RBP eCLIP15.88■□□□□ 0.13
FAM3A-221ENST00000612856 ATAD2BQ9ULI0 1458 aa15.86■□□□□ 0.13
FAM3A-221ENST00000612856 TRIM52Q96A61 297 aa15.85■□□□□ 0.13
FAM3A-221ENST00000612856 SENP3Q9H4L4 574 aaPredicted RBP15.79■□□□□ 0.12
FAM3A-221ENST00000612856 ERCC6Q03468 1493 aa15.76■□□□□ 0.11
FAM3A-221ENST00000612856 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
FAM3A-221ENST00000612856 CEP162Q5TB80 1403 aa15.76■□□□□ 0.11
FAM3A-221ENST00000612856 KCNH8Q96L42 1107 aa15.75■□□□□ 0.11
FAM3A-221ENST00000612856 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
FAM3A-221ENST00000612856 SLC4A1APQ9BWU0 796 aaKnown RBP15.7■□□□□ 0.1
FAM3A-221ENST00000612856 CHIC2Q9UKJ5 165 aa15.69■□□□□ 0.1
FAM3A-221ENST00000612856 NPM1P06748 294 aaKnown RBP eCLIP15.68■□□□□ 0.1
FAM3A-221ENST00000612856 BCL11AQ9H165 835 aa15.64■□□□□ 0.09
FAM3A-221ENST00000612856 TNIKQ9UKE5 1360 aa15.61■□□□□ 0.09
FAM3A-221ENST00000612856 EIF4G1Q04637 1599 aaKnown RBP15.61■□□□□ 0.09
FAM3A-221ENST00000612856 GOLGA3Q08378 1498 aa15.6■□□□□ 0.09
FAM3A-221ENST00000612856 CLIP1P30622 1438 aa15.6■□□□□ 0.09
FAM3A-221ENST00000612856 TDRD9Q8NDG6 1382 aaKnown RBP15.6■□□□□ 0.09
FAM3A-221ENST00000612856 SYNJ1O43426 1573 aa15.57■□□□□ 0.08
FAM3A-221ENST00000612856 BCANQ96GW7 911 aa15.57■□□□□ 0.08
FAM3A-221ENST00000612856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.56■□□□□ 0.08
FAM3A-221ENST00000612856 EEA1Q15075 1411 aa15.54■□□□□ 0.08
FAM3A-221ENST00000612856 RAPGEF2Q9Y4G8 1499 aa15.54■□□□□ 0.08
FAM3A-221ENST00000612856 CHGAP10645 457 aaKnown RBP15.53■□□□□ 0.08
FAM3A-221ENST00000612856 TRHP20396 242 aaPredicted RBP15.52■□□□□ 0.07
FAM3A-221ENST00000612856 ERICH6Q7L0X2 663 aa15.51■□□□□ 0.07
FAM3A-221ENST00000612856 CEP164Q9UPV0 1460 aa15.51■□□□□ 0.07
FAM3A-221ENST00000612856 CDK11AQ9UQ88 783 aaPredicted RBP15.51■□□□□ 0.07
FAM3A-221ENST00000612856 NCAPD3P42695 1498 aa15.47■□□□□ 0.07
FAM3A-221ENST00000612856 ZNF316A6NFI3 1004 aaPredicted RBP15.47■□□□□ 0.07
FAM3A-221ENST00000612856 MIER1Q8N108 512 aa15.46■□□□□ 0.06
FAM3A-221ENST00000612856 CUX2O14529 1486 aa15.44■□□□□ 0.06
FAM3A-221ENST00000612856 KIF27Q86VH2 1401 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms