Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PCDHGA1Q9Y5H4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
PCDHGA1Q9Y5H4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.55■■□□□ 1.84
PCDHGA1Q9Y5H4 WASH5P-204ENST00000632292 975 ntBASIC26.55■■□□□ 1.84
PCDHGA1Q9Y5H4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.55■■□□□ 1.84
PCDHGA1Q9Y5H4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHGA1Q9Y5H4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.53■■□□□ 1.84
PCDHGA1Q9Y5H4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PCDHGA1Q9Y5H4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.52■■□□□ 1.84
PCDHGA1Q9Y5H4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.52■■□□□ 1.84
PCDHGA1Q9Y5H4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHGA1Q9Y5H4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHGA1Q9Y5H4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHGA1Q9Y5H4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.51■■□□□ 1.83
PCDHGA1Q9Y5H4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
PCDHGA1Q9Y5H4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHGA1Q9Y5H4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHGA1Q9Y5H4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHGA1Q9Y5H4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHGA1Q9Y5H4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.48■■□□□ 1.83
PCDHGA1Q9Y5H4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHGA1Q9Y5H4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHGA1Q9Y5H4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHGA1Q9Y5H4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHGA1Q9Y5H4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHGA1Q9Y5H4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.44■■□□□ 1.82
PCDHGA1Q9Y5H4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
PCDHGA1Q9Y5H4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
PCDHGA1Q9Y5H4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHGA1Q9Y5H4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHGA1Q9Y5H4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PCDHGA1Q9Y5H4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHGA1Q9Y5H4 DUX4L29-201ENST00000425409 679 ntBASIC26.41■■□□□ 1.82
PCDHGA1Q9Y5H4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHGA1Q9Y5H4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.39■■□□□ 1.82
PCDHGA1Q9Y5H4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHGA1Q9Y5H4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHGA1Q9Y5H4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
PCDHGA1Q9Y5H4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.37■■□□□ 1.81
PCDHGA1Q9Y5H4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
PCDHGA1Q9Y5H4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHGA1Q9Y5H4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHGA1Q9Y5H4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.32■■□□□ 1.8
PCDHGA1Q9Y5H4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHGA1Q9Y5H4 MIR4449-201ENST00000578365 66 ntBASIC26.32■■□□□ 1.8
PCDHGA1Q9Y5H4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDHGA1Q9Y5H4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.31■■□□□ 1.8
PCDHGA1Q9Y5H4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.29■■□□□ 1.8
PCDHGA1Q9Y5H4 MIR639-201ENST00000384974 98 ntBASIC26.28■■□□□ 1.8
PCDHGA1Q9Y5H4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.27■■□□□ 1.8
PCDHGA1Q9Y5H4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PCDHGA1Q9Y5H4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PCDHGA1Q9Y5H4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC26.26■■□□□ 1.79
PCDHGA1Q9Y5H4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDHGA1Q9Y5H4 AC021231.2-201ENST00000594613 730 ntBASIC26.25■■□□□ 1.79
PCDHGA1Q9Y5H4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDHGA1Q9Y5H4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
PCDHGA1Q9Y5H4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.23■■□□□ 1.79
PCDHGA1Q9Y5H4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDHGA1Q9Y5H4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
PCDHGA1Q9Y5H4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.21■■□□□ 1.79
PCDHGA1Q9Y5H4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.21■■□□□ 1.79
PCDHGA1Q9Y5H4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDHGA1Q9Y5H4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.19■■□□□ 1.78
PCDHGA1Q9Y5H4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.18■■□□□ 1.78
PCDHGA1Q9Y5H4 AC108673.1-201ENST00000510422 1159 ntBASIC26.17■■□□□ 1.78
PCDHGA1Q9Y5H4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PCDHGA1Q9Y5H4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.14■■□□□ 1.78
PCDHGA1Q9Y5H4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.14■■□□□ 1.78
PCDHGA1Q9Y5H4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PCDHGA1Q9Y5H4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
PCDHGA1Q9Y5H4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.12■■□□□ 1.77
PCDHGA1Q9Y5H4 MIR3648-2-201ENST00000581792 180 ntBASIC26.12■■□□□ 1.77
PCDHGA1Q9Y5H4 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.12■■□□□ 1.77
PCDHGA1Q9Y5H4 MIR3648-1-201ENST00000615959 180 ntBASIC26.12■■□□□ 1.77
PCDHGA1Q9Y5H4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHGA1Q9Y5H4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHGA1Q9Y5H4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.11■■□□□ 1.77
PCDHGA1Q9Y5H4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHGA1Q9Y5H4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHGA1Q9Y5H4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.1■■□□□ 1.77
PCDHGA1Q9Y5H4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHGA1Q9Y5H4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDHGA1Q9Y5H4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.09■■□□□ 1.77
PCDHGA1Q9Y5H4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.09■■□□□ 1.77
PCDHGA1Q9Y5H4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.08■■□□□ 1.77
PCDHGA1Q9Y5H4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.07■■□□□ 1.76
PCDHGA1Q9Y5H4 AC016575.1-201ENST00000607026 382 ntBASIC26.07■■□□□ 1.76
PCDHGA1Q9Y5H4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHGA1Q9Y5H4 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHGA1Q9Y5H4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.06■■□□□ 1.76
PCDHGA1Q9Y5H4 LINC01971-201ENST00000617888 1048 ntBASIC26.06■■□□□ 1.76
PCDHGA1Q9Y5H4 MIR6090-201ENST00000622481 60 ntBASIC26.06■■□□□ 1.76
PCDHGA1Q9Y5H4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDHGA1Q9Y5H4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms