Protein–RNA interactions for Protein: Q9NV64

TMEM39A, Transmembrane protein 39A, humanhuman

Predictions only

Length 488 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39AQ9NV64 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
TMEM39AQ9NV64 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
TMEM39AQ9NV64 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
TMEM39AQ9NV64 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.46■■■□□ 2.47
TMEM39AQ9NV64 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.46■■■□□ 2.47
TMEM39AQ9NV64 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
TMEM39AQ9NV64 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.45■■■□□ 2.47
TMEM39AQ9NV64 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
TMEM39AQ9NV64 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.44■■■□□ 2.46
TMEM39AQ9NV64 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.43■■■□□ 2.46
TMEM39AQ9NV64 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
TMEM39AQ9NV64 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TMEM39AQ9NV64 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TMEM39AQ9NV64 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
TMEM39AQ9NV64 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.38■■■□□ 2.45
TMEM39AQ9NV64 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.38■■■□□ 2.45
TMEM39AQ9NV64 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TMEM39AQ9NV64 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.37■■■□□ 2.45
TMEM39AQ9NV64 DUX4L29-201ENST00000425409 679 ntBASIC30.37■■■□□ 2.45
TMEM39AQ9NV64 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TMEM39AQ9NV64 WASH5P-204ENST00000632292 975 ntBASIC30.37■■■□□ 2.45
TMEM39AQ9NV64 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TMEM39AQ9NV64 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
TMEM39AQ9NV64 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
TMEM39AQ9NV64 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
TMEM39AQ9NV64 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
TMEM39AQ9NV64 MIR4449-201ENST00000578365 66 ntBASIC30.31■■■□□ 2.44
TMEM39AQ9NV64 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
TMEM39AQ9NV64 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TMEM39AQ9NV64 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
TMEM39AQ9NV64 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.28■■■□□ 2.44
TMEM39AQ9NV64 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
TMEM39AQ9NV64 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
TMEM39AQ9NV64 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TMEM39AQ9NV64 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TMEM39AQ9NV64 MIR639-201ENST00000384974 98 ntBASIC30.23■■■□□ 2.43
TMEM39AQ9NV64 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
TMEM39AQ9NV64 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
TMEM39AQ9NV64 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
TMEM39AQ9NV64 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
TMEM39AQ9NV64 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
TMEM39AQ9NV64 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.21■■■□□ 2.43
TMEM39AQ9NV64 AC021231.2-201ENST00000594613 730 ntBASIC30.2■■■□□ 2.43
TMEM39AQ9NV64 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.18■■■□□ 2.42
TMEM39AQ9NV64 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TMEM39AQ9NV64 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.18■■■□□ 2.42
TMEM39AQ9NV64 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TMEM39AQ9NV64 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
TMEM39AQ9NV64 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
TMEM39AQ9NV64 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
TMEM39AQ9NV64 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TMEM39AQ9NV64 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.14■■■□□ 2.42
TMEM39AQ9NV64 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.14■■■□□ 2.42
TMEM39AQ9NV64 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.13■■■□□ 2.41
TMEM39AQ9NV64 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
TMEM39AQ9NV64 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
TMEM39AQ9NV64 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
TMEM39AQ9NV64 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.09■■■□□ 2.41
TMEM39AQ9NV64 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.09■■■□□ 2.41
TMEM39AQ9NV64 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.09■■■□□ 2.41
TMEM39AQ9NV64 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
TMEM39AQ9NV64 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.08■■■□□ 2.41
TMEM39AQ9NV64 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
TMEM39AQ9NV64 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 MIR3648-2-201ENST00000581792 180 ntBASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 AC016575.1-201ENST00000607026 382 ntBASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 MIR3648-1-201ENST00000615959 180 ntBASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
TMEM39AQ9NV64 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.05■■■□□ 2.4
TMEM39AQ9NV64 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
TMEM39AQ9NV64 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.04■■■□□ 2.4
TMEM39AQ9NV64 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.02■■■□□ 2.4
TMEM39AQ9NV64 HSD17B1P1-201ENST00000590052 955 ntBASIC30.01■■■□□ 2.39
TMEM39AQ9NV64 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
TMEM39AQ9NV64 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
TMEM39AQ9NV64 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.98■■■□□ 2.39
TMEM39AQ9NV64 AC108673.1-201ENST00000510422 1159 ntBASIC29.98■■■□□ 2.39
TMEM39AQ9NV64 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.98■■■□□ 2.39
TMEM39AQ9NV64 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.97■■■□□ 2.39
TMEM39AQ9NV64 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
TMEM39AQ9NV64 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.96■■■□□ 2.39
TMEM39AQ9NV64 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
TMEM39AQ9NV64 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC29.95■■■□□ 2.39
TMEM39AQ9NV64 MIR6090-201ENST00000622481 60 ntBASIC29.95■■■□□ 2.39
TMEM39AQ9NV64 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
TMEM39AQ9NV64 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
TMEM39AQ9NV64 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.92■■■□□ 2.38
TMEM39AQ9NV64 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
TMEM39AQ9NV64 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.91■■■□□ 2.38
TMEM39AQ9NV64 DUX4L11-201ENST00000611504 1267 ntBASIC29.91■■■□□ 2.38
TMEM39AQ9NV64 DUX4L12-201ENST00000614593 1267 ntBASIC29.91■■■□□ 2.38
TMEM39AQ9NV64 DUX4L14-201ENST00000621227 1267 ntBASIC29.91■■■□□ 2.38
TMEM39AQ9NV64 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.9■■■□□ 2.38
TMEM39AQ9NV64 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.9■■■□□ 2.38
TMEM39AQ9NV64 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.9■■■□□ 2.38
TMEM39AQ9NV64 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.89■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms