Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HLA-V-202ENST00000446817 847 ntBASIC35.19■■■■□ 3.22
USP42Q9H9J4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
USP42Q9H9J4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.16■■■■□ 3.22
USP42Q9H9J4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.14■■■■□ 3.22
USP42Q9H9J4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.08■■■■□ 3.21
USP42Q9H9J4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.08■■■■□ 3.21
USP42Q9H9J4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.08■■■■□ 3.21
USP42Q9H9J4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
USP42Q9H9J4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
USP42Q9H9J4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
USP42Q9H9J4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
USP42Q9H9J4 ZNRF2P2-203ENST00000454624 420 ntBASIC35.05■■■■□ 3.2
USP42Q9H9J4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.05■■■■□ 3.2
USP42Q9H9J4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.03■■■■□ 3.2
USP42Q9H9J4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.01■■■■□ 3.19
USP42Q9H9J4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.99■■■■□ 3.19
USP42Q9H9J4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
USP42Q9H9J4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC34.98■■■■□ 3.19
USP42Q9H9J4 WASH5P-204ENST00000632292 975 ntBASIC34.98■■■■□ 3.19
USP42Q9H9J4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC34.97■■■■□ 3.19
USP42Q9H9J4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC34.97■■■■□ 3.19
USP42Q9H9J4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC34.96■■■■□ 3.19
USP42Q9H9J4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
USP42Q9H9J4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
USP42Q9H9J4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC34.95■■■■□ 3.18
USP42Q9H9J4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.94■■■■□ 3.18
USP42Q9H9J4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC34.94■■■■□ 3.18
USP42Q9H9J4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
USP42Q9H9J4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC34.93■■■■□ 3.18
USP42Q9H9J4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.93■■■■□ 3.18
USP42Q9H9J4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.9■■■■□ 3.18
USP42Q9H9J4 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC34.9■■■■□ 3.18
USP42Q9H9J4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
USP42Q9H9J4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
USP42Q9H9J4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.89■■■■□ 3.18
USP42Q9H9J4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
USP42Q9H9J4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
USP42Q9H9J4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC34.87■■■■□ 3.17
USP42Q9H9J4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.85■■■■□ 3.17
USP42Q9H9J4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
USP42Q9H9J4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.82■■■■□ 3.17
USP42Q9H9J4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC34.82■■■■□ 3.16
USP42Q9H9J4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.81■■■■□ 3.16
USP42Q9H9J4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
USP42Q9H9J4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
USP42Q9H9J4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
USP42Q9H9J4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.79■■■■□ 3.16
USP42Q9H9J4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
USP42Q9H9J4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.78■■■■□ 3.16
USP42Q9H9J4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
USP42Q9H9J4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
USP42Q9H9J4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.76■■■■□ 3.15
USP42Q9H9J4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
USP42Q9H9J4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.74■■■■□ 3.15
USP42Q9H9J4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC34.74■■■■□ 3.15
USP42Q9H9J4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.73■■■■□ 3.15
USP42Q9H9J4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
USP42Q9H9J4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
USP42Q9H9J4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.71■■■■□ 3.15
USP42Q9H9J4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
USP42Q9H9J4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
USP42Q9H9J4 DUX4L29-201ENST00000425409 679 ntBASIC34.7■■■■□ 3.15
USP42Q9H9J4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.69■■■■□ 3.14
USP42Q9H9J4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
USP42Q9H9J4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
USP42Q9H9J4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
USP42Q9H9J4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
USP42Q9H9J4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
USP42Q9H9J4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
USP42Q9H9J4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
USP42Q9H9J4 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
USP42Q9H9J4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.65■■■■□ 3.14
USP42Q9H9J4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
USP42Q9H9J4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
USP42Q9H9J4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
USP42Q9H9J4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
USP42Q9H9J4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.63■■■■□ 3.13
USP42Q9H9J4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
USP42Q9H9J4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
USP42Q9H9J4 MIR4449-201ENST00000578365 66 ntBASIC34.61■■■■□ 3.13
USP42Q9H9J4 AC021231.2-201ENST00000594613 730 ntBASIC34.6■■■■□ 3.13
USP42Q9H9J4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.6■■■■□ 3.13
USP42Q9H9J4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC34.6■■■■□ 3.13
USP42Q9H9J4 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
USP42Q9H9J4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
USP42Q9H9J4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
USP42Q9H9J4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.56■■■■□ 3.12
USP42Q9H9J4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
USP42Q9H9J4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
USP42Q9H9J4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
USP42Q9H9J4 MIR639-201ENST00000384974 98 ntBASIC34.53■■■■□ 3.12
USP42Q9H9J4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
USP42Q9H9J4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
USP42Q9H9J4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC34.49■■■■□ 3.11
USP42Q9H9J4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.49■■■■□ 3.11
USP42Q9H9J4 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
USP42Q9H9J4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
USP42Q9H9J4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
USP42Q9H9J4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.46■■■■□ 3.11
USP42Q9H9J4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC34.46■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms