Protein–RNA interactions for Protein: Q92617

NPIPB3, Nuclear pore complex-interacting protein family member B3, humanhuman

Predictions only

Length 1,050 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3Q92617 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NPIPB3Q92617 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NPIPB3Q92617 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NPIPB3Q92617 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPIPB3Q92617 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPIPB3Q92617 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPIPB3Q92617 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
NPIPB3Q92617 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPIPB3Q92617 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.29■■□□□ 1
NPIPB3Q92617 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPIPB3Q92617 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NPIPB3Q92617 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPIPB3Q92617 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPIPB3Q92617 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPIPB3Q92617 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPIPB3Q92617 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
NPIPB3Q92617 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.25■□□□□ 0.99
NPIPB3Q92617 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPIPB3Q92617 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPIPB3Q92617 AL031258.1-201ENST00000623562 325 ntBASIC21.24■□□□□ 0.99
NPIPB3Q92617 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NPIPB3Q92617 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPIPB3Q92617 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.23■□□□□ 0.99
NPIPB3Q92617 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPIPB3Q92617 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NPIPB3Q92617 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPIPB3Q92617 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPIPB3Q92617 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPIPB3Q92617 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
NPIPB3Q92617 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPIPB3Q92617 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPIPB3Q92617 ABCB10P3-201ENST00000561950 2166 ntBASIC21.21■□□□□ 0.99
NPIPB3Q92617 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NPIPB3Q92617 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPIPB3Q92617 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPIPB3Q92617 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
NPIPB3Q92617 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPIPB3Q92617 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPIPB3Q92617 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.19■□□□□ 0.98
NPIPB3Q92617 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPIPB3Q92617 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPIPB3Q92617 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPIPB3Q92617 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
NPIPB3Q92617 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPIPB3Q92617 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.15■□□□□ 0.98
NPIPB3Q92617 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPIPB3Q92617 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.15■□□□□ 0.98
NPIPB3Q92617 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPIPB3Q92617 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NPIPB3Q92617 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NPIPB3Q92617 AL161658.1-201ENST00000623641 1967 ntBASIC21.14■□□□□ 0.97
NPIPB3Q92617 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.13■□□□□ 0.97
NPIPB3Q92617 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPIPB3Q92617 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NPIPB3Q92617 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NPIPB3Q92617 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
NPIPB3Q92617 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPIPB3Q92617 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NPIPB3Q92617 AP002365.1-201ENST00000603448 772 ntBASIC21.12■□□□□ 0.97
NPIPB3Q92617 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NPIPB3Q92617 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
NPIPB3Q92617 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPIPB3Q92617 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPIPB3Q92617 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.1■□□□□ 0.97
NPIPB3Q92617 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPIPB3Q92617 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NPIPB3Q92617 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPIPB3Q92617 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPIPB3Q92617 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPIPB3Q92617 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPIPB3Q92617 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPIPB3Q92617 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPIPB3Q92617 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NPIPB3Q92617 AC139426.1-201ENST00000568218 2529 ntBASIC21.08■□□□□ 0.96
NPIPB3Q92617 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPIPB3Q92617 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
NPIPB3Q92617 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPIPB3Q92617 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.07■□□□□ 0.96
NPIPB3Q92617 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
NPIPB3Q92617 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPIPB3Q92617 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPIPB3Q92617 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPIPB3Q92617 ST7-AS1-201ENST00000456775 1889 ntBASIC21.04■□□□□ 0.96
NPIPB3Q92617 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.03■□□□□ 0.96
NPIPB3Q92617 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPIPB3Q92617 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPIPB3Q92617 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPIPB3Q92617 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPIPB3Q92617 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPIPB3Q92617 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
NPIPB3Q92617 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPIPB3Q92617 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
NPIPB3Q92617 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPIPB3Q92617 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
NPIPB3Q92617 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPIPB3Q92617 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.99■□□□□ 0.95
NPIPB3Q92617 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NPIPB3Q92617 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPIPB3Q92617 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPIPB3Q92617 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms