Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC35.75■■■■□ 3.31
RTF1Q92541 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.74■■■■□ 3.31
RTF1Q92541 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
RTF1Q92541 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC35.71■■■■□ 3.31
RTF1Q92541 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.71■■■■□ 3.31
RTF1Q92541 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
RTF1Q92541 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
RTF1Q92541 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC35.71■■■■□ 3.31
RTF1Q92541 MIR762-201ENST00000390236 83 ntBASIC35.7■■■■□ 3.31
RTF1Q92541 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
RTF1Q92541 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
RTF1Q92541 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.68■■■■□ 3.3
RTF1Q92541 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC35.68■■■■□ 3.3
RTF1Q92541 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.67■■■■□ 3.3
RTF1Q92541 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC35.66■■■■□ 3.3
RTF1Q92541 MIR3665-201ENST00000578708 105 ntBASIC35.66■■■■□ 3.3
RTF1Q92541 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.65■■■■□ 3.3
RTF1Q92541 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
RTF1Q92541 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
RTF1Q92541 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC35.62■■■■□ 3.29
RTF1Q92541 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
RTF1Q92541 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.61■■■■□ 3.29
RTF1Q92541 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
RTF1Q92541 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.6■■■■□ 3.29
RTF1Q92541 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
RTF1Q92541 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
RTF1Q92541 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
RTF1Q92541 AC005559.1-201ENST00000589661 871 ntBASIC35.57■■■■□ 3.28
RTF1Q92541 DUX4L28-201ENST00000623687 678 ntBASIC35.56■■■■□ 3.28
RTF1Q92541 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.54■■■■□ 3.28
RTF1Q92541 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
RTF1Q92541 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
RTF1Q92541 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
RTF1Q92541 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.51■■■■□ 3.28
RTF1Q92541 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC35.51■■■■□ 3.28
RTF1Q92541 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.5■■■■□ 3.27
RTF1Q92541 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
RTF1Q92541 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
RTF1Q92541 AC087741.3-201ENST00000624270 1347 ntBASIC35.47■■■■□ 3.27
RTF1Q92541 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
RTF1Q92541 AC120057.4-201ENST00000624722 1615 ntBASIC35.46■■■■□ 3.27
RTF1Q92541 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.44■■■■□ 3.26
RTF1Q92541 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC35.44■■■■□ 3.26
RTF1Q92541 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
RTF1Q92541 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC35.42■■■■□ 3.26
RTF1Q92541 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
RTF1Q92541 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC35.4■■■■□ 3.26
RTF1Q92541 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.4■■■■□ 3.26
RTF1Q92541 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC35.4■■■■□ 3.26
RTF1Q92541 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
RTF1Q92541 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
RTF1Q92541 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC35.38■■■■□ 3.25
RTF1Q92541 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.38■■■■□ 3.25
RTF1Q92541 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC35.37■■■■□ 3.25
RTF1Q92541 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
RTF1Q92541 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.35■■■■□ 3.25
RTF1Q92541 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
RTF1Q92541 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC35.33■■■■□ 3.25
RTF1Q92541 AC044849.2-201ENST00000606596 710 ntBASIC35.33■■■■□ 3.25
RTF1Q92541 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
RTF1Q92541 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
RTF1Q92541 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC35.32■■■■□ 3.24
RTF1Q92541 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC35.3■■■■□ 3.24
RTF1Q92541 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
RTF1Q92541 RPS2-209ENST00000529806 993 ntTSL 3 BASIC35.29■■■■□ 3.24
RTF1Q92541 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
RTF1Q92541 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
RTF1Q92541 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.28■■■■□ 3.24
RTF1Q92541 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
RTF1Q92541 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
RTF1Q92541 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC35.26■■■■□ 3.24
RTF1Q92541 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC35.26■■■■□ 3.24
RTF1Q92541 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.25■■■■□ 3.23
RTF1Q92541 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.25■■■■□ 3.23
RTF1Q92541 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
RTF1Q92541 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
RTF1Q92541 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC35.23■■■■□ 3.23
RTF1Q92541 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC35.23■■■■□ 3.23
RTF1Q92541 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
RTF1Q92541 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC35.21■■■■□ 3.23
RTF1Q92541 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
RTF1Q92541 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
RTF1Q92541 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
RTF1Q92541 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
RTF1Q92541 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
RTF1Q92541 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.18■■■■□ 3.22
RTF1Q92541 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
RTF1Q92541 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC35.16■■■■□ 3.22
RTF1Q92541 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC35.16■■■■□ 3.22
RTF1Q92541 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC35.15■■■■□ 3.22
RTF1Q92541 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
RTF1Q92541 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
RTF1Q92541 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
RTF1Q92541 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
RTF1Q92541 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
RTF1Q92541 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RTF1Q92541 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RTF1Q92541 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC35.1■■■■□ 3.21
RTF1Q92541 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
RTF1Q92541 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.1■■■■□ 3.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms