Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MIR3648-2-201ENST00000581792 180 ntBASIC20.64■□□□□ 0.89
PRKDCP78527 MIR3648-1-201ENST00000615959 180 ntBASIC20.64■□□□□ 0.89
PRKDCP78527 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.63■□□□□ 0.89
PRKDCP78527 CR559946.2-201ENST00000623684 991 ntBASIC20.63■□□□□ 0.89
PRKDCP78527 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PRKDCP78527 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.63■□□□□ 0.89
PRKDCP78527 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRKDCP78527 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.61■□□□□ 0.89
PRKDCP78527 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PRKDCP78527 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.58■□□□□ 0.88
PRKDCP78527 AC016575.1-201ENST00000607026 382 ntBASIC20.58■□□□□ 0.88
PRKDCP78527 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PRKDCP78527 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRKDCP78527 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PRKDCP78527 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRKDCP78527 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.55■□□□□ 0.88
PRKDCP78527 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.55■□□□□ 0.88
PRKDCP78527 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRKDCP78527 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.55■□□□□ 0.88
PRKDCP78527 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PRKDCP78527 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.53■□□□□ 0.88
PRKDCP78527 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKDCP78527 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
PRKDCP78527 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.53■□□□□ 0.88
PRKDCP78527 AC021231.2-201ENST00000594613 730 ntBASIC20.53■□□□□ 0.88
PRKDCP78527 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
PRKDCP78527 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRKDCP78527 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PRKDCP78527 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRKDCP78527 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRKDCP78527 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.49■□□□□ 0.87
PRKDCP78527 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.48■□□□□ 0.87
PRKDCP78527 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PRKDCP78527 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 RARRES2P2-201ENST00000394842 485 ntBASIC20.46■□□□□ 0.87
PRKDCP78527 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PRKDCP78527 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PRKDCP78527 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.43■□□□□ 0.86
PRKDCP78527 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.43■□□□□ 0.86
PRKDCP78527 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.42■□□□□ 0.86
PRKDCP78527 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PRKDCP78527 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.41■□□□□ 0.86
PRKDCP78527 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PRKDCP78527 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PRKDCP78527 DUX4L29-201ENST00000425409 679 ntBASIC20.41■□□□□ 0.86
PRKDCP78527 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PRKDCP78527 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.4■□□□□ 0.86
PRKDCP78527 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PRKDCP78527 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PRKDCP78527 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PRKDCP78527 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
PRKDCP78527 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PRKDCP78527 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PRKDCP78527 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.35■□□□□ 0.85
PRKDCP78527 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PRKDCP78527 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.35■□□□□ 0.85
PRKDCP78527 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PRKDCP78527 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PRKDCP78527 ABHD17AP5-201ENST00000580133 923 ntBASIC20.31■□□□□ 0.84
PRKDCP78527 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PRKDCP78527 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PRKDCP78527 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PRKDCP78527 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PRKDCP78527 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PRKDCP78527 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
PRKDCP78527 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PRKDCP78527 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.29■□□□□ 0.84
PRKDCP78527 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.28■□□□□ 0.84
PRKDCP78527 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PRKDCP78527 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PRKDCP78527 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.27■□□□□ 0.84
PRKDCP78527 LINC01971-201ENST00000617888 1048 ntBASIC20.27■□□□□ 0.84
PRKDCP78527 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PRKDCP78527 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
PRKDCP78527 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.26■□□□□ 0.83
PRKDCP78527 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKDCP78527 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PRKDCP78527 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
PRKDCP78527 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PRKDCP78527 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.25■□□□□ 0.83
PRKDCP78527 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKDCP78527 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.22■□□□□ 0.83
PRKDCP78527 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PRKDCP78527 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKDCP78527 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKDCP78527 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.21■□□□□ 0.83
PRKDCP78527 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.2■□□□□ 0.82
PRKDCP78527 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L11-201ENST00000611504 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L12-201ENST00000614593 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 DUX4L14-201ENST00000621227 1267 ntBASIC20.2■□□□□ 0.82
PRKDCP78527 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PRKDCP78527 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.17■□□□□ 0.82
PRKDCP78527 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PRKDCP78527 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms