Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CCNA1P78396 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.55■■■□□ 2.64
CCNA1P78396 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
CCNA1P78396 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.53■■■□□ 2.64
CCNA1P78396 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCNA1P78396 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.52■■■□□ 2.64
CCNA1P78396 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.52■■■□□ 2.64
CCNA1P78396 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.51■■■□□ 2.63
CCNA1P78396 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.51■■■□□ 2.63
CCNA1P78396 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CCNA1P78396 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.49■■■□□ 2.63
CCNA1P78396 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CCNA1P78396 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.48■■■□□ 2.63
CCNA1P78396 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
CCNA1P78396 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCNA1P78396 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.45■■■□□ 2.63
CCNA1P78396 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCNA1P78396 HLA-V-202ENST00000446817 847 ntBASIC31.44■■■□□ 2.62
CCNA1P78396 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.44■■■□□ 2.62
CCNA1P78396 ZNRF2P2-203ENST00000454624 420 ntBASIC31.42■■■□□ 2.62
CCNA1P78396 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCNA1P78396 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCNA1P78396 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCNA1P78396 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.41■■■□□ 2.62
CCNA1P78396 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
CCNA1P78396 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCNA1P78396 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCNA1P78396 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCNA1P78396 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCNA1P78396 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CCNA1P78396 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCNA1P78396 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCNA1P78396 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCNA1P78396 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.33■■■□□ 2.61
CCNA1P78396 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCNA1P78396 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCNA1P78396 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.3■■■□□ 2.6
CCNA1P78396 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CCNA1P78396 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
CCNA1P78396 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCNA1P78396 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CCNA1P78396 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCNA1P78396 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCNA1P78396 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CCNA1P78396 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.26■■■□□ 2.59
CCNA1P78396 DUX4L29-201ENST00000425409 679 ntBASIC31.26■■■□□ 2.59
CCNA1P78396 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCNA1P78396 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.26■■■□□ 2.59
CCNA1P78396 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCNA1P78396 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCNA1P78396 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.25■■■□□ 2.59
CCNA1P78396 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.24■■■□□ 2.59
CCNA1P78396 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.24■■■□□ 2.59
CCNA1P78396 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.24■■■□□ 2.59
CCNA1P78396 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CCNA1P78396 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCNA1P78396 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCNA1P78396 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CCNA1P78396 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCNA1P78396 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCNA1P78396 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.19■■■□□ 2.58
CCNA1P78396 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCNA1P78396 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.18■■■□□ 2.58
CCNA1P78396 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCNA1P78396 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
CCNA1P78396 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.17■■■□□ 2.58
CCNA1P78396 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.16■■■□□ 2.58
CCNA1P78396 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCNA1P78396 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCNA1P78396 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCNA1P78396 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
CCNA1P78396 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CCNA1P78396 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCNA1P78396 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.11■■■□□ 2.57
CCNA1P78396 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.11■■■□□ 2.57
CCNA1P78396 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCNA1P78396 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.1■■■□□ 2.57
CCNA1P78396 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
CCNA1P78396 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
CCNA1P78396 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCNA1P78396 AC021231.2-201ENST00000594613 730 ntBASIC31.08■■■□□ 2.57
CCNA1P78396 AC108673.1-201ENST00000510422 1159 ntBASIC31.06■■■□□ 2.56
CCNA1P78396 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.06■■■□□ 2.56
CCNA1P78396 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCNA1P78396 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCNA1P78396 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCNA1P78396 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.03■■■□□ 2.56
CCNA1P78396 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.02■■■□□ 2.56
CCNA1P78396 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.56
CCNA1P78396 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCNA1P78396 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.01■■■□□ 2.55
CCNA1P78396 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31■■■□□ 2.55
CCNA1P78396 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.99■■■□□ 2.55
CCNA1P78396 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCNA1P78396 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCNA1P78396 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.96■■■□□ 2.55
CCNA1P78396 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.96■■■□□ 2.55
CCNA1P78396 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
CCNA1P78396 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CCNA1P78396 MIR6090-201ENST00000622481 60 ntBASIC30.95■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms