Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.28■■■□□ 2.76
SHMT1P34896 DUX4L28-201ENST00000623687 678 ntBASIC32.28■■■□□ 2.76
SHMT1P34896 MIR3665-201ENST00000578708 105 ntBASIC32.26■■■□□ 2.75
SHMT1P34896 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
SHMT1P34896 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
SHMT1P34896 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
SHMT1P34896 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
SHMT1P34896 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
SHMT1P34896 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
SHMT1P34896 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.22■■■□□ 2.75
SHMT1P34896 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.21■■■□□ 2.75
SHMT1P34896 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.2■■■□□ 2.75
SHMT1P34896 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
SHMT1P34896 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SHMT1P34896 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SHMT1P34896 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHMT1P34896 AC087741.3-201ENST00000624270 1347 ntBASIC32.18■■■□□ 2.74
SHMT1P34896 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHMT1P34896 AC005559.1-201ENST00000589661 871 ntBASIC32.17■■■□□ 2.74
SHMT1P34896 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHMT1P34896 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHMT1P34896 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
SHMT1P34896 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
SHMT1P34896 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.13■■■□□ 2.73
SHMT1P34896 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SHMT1P34896 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SHMT1P34896 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SHMT1P34896 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHMT1P34896 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHMT1P34896 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.08■■■□□ 2.73
SHMT1P34896 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.08■■■□□ 2.73
SHMT1P34896 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHMT1P34896 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHMT1P34896 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.04■■■□□ 2.72
SHMT1P34896 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.03■■■□□ 2.72
SHMT1P34896 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC32.03■■■□□ 2.72
SHMT1P34896 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHMT1P34896 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
SHMT1P34896 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHMT1P34896 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
SHMT1P34896 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.01■■■□□ 2.71
SHMT1P34896 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.01■■■□□ 2.71
SHMT1P34896 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SHMT1P34896 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHMT1P34896 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
SHMT1P34896 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
SHMT1P34896 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHMT1P34896 AC044849.2-201ENST00000606596 710 ntBASIC31.97■■■□□ 2.71
SHMT1P34896 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHMT1P34896 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.96■■■□□ 2.71
SHMT1P34896 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SHMT1P34896 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SHMT1P34896 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
SHMT1P34896 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
SHMT1P34896 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHMT1P34896 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SHMT1P34896 AC120057.4-201ENST00000624722 1615 ntBASIC31.9■■■□□ 2.7
SHMT1P34896 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SHMT1P34896 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SHMT1P34896 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.89■■■□□ 2.7
SHMT1P34896 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHMT1P34896 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHMT1P34896 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.88■■■□□ 2.69
SHMT1P34896 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHMT1P34896 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHMT1P34896 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.83■■■□□ 2.69
SHMT1P34896 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.83■■■□□ 2.69
SHMT1P34896 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.82■■■□□ 2.68
SHMT1P34896 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SHMT1P34896 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHMT1P34896 ABHD17AP4-201ENST00000411545 909 ntBASIC31.82■■■□□ 2.68
SHMT1P34896 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
SHMT1P34896 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHMT1P34896 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.81■■■□□ 2.68
SHMT1P34896 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.8■■■□□ 2.68
SHMT1P34896 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHMT1P34896 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHMT1P34896 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.78■■■□□ 2.68
SHMT1P34896 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SHMT1P34896 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.77■■■□□ 2.68
SHMT1P34896 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.68
SHMT1P34896 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.76■■■□□ 2.67
SHMT1P34896 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHMT1P34896 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHMT1P34896 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.75■■■□□ 2.67
SHMT1P34896 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHMT1P34896 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SHMT1P34896 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.74■■■□□ 2.67
SHMT1P34896 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.73■■■□□ 2.67
SHMT1P34896 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
SHMT1P34896 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHMT1P34896 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHMT1P34896 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHMT1P34896 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.71■■■□□ 2.67
SHMT1P34896 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SHMT1P34896 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHMT1P34896 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.7■■■□□ 2.67
SHMT1P34896 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SHMT1P34896 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
SHMT1P34896 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms