Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 CHML-205ENST00000638160 705 ntTSL 3 BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.2■■□□□ 1.14
TRAV40A0A0B4J280 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
TRAV40A0A0B4J280 DUX4L28-201ENST00000623687 678 ntBASIC22.19■■□□□ 1.14
TRAV40A0A0B4J280 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 AC005559.1-201ENST00000589661 871 ntBASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.17■■□□□ 1.14
TRAV40A0A0B4J280 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.17■■□□□ 1.14
TRAV40A0A0B4J280 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
TRAV40A0A0B4J280 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV40A0A0B4J280 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV40A0A0B4J280 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV40A0A0B4J280 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV40A0A0B4J280 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV40A0A0B4J280 AC087741.3-201ENST00000624270 1347 ntBASIC22.11■■□□□ 1.13
TRAV40A0A0B4J280 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC22.11■■□□□ 1.13
TRAV40A0A0B4J280 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV40A0A0B4J280 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV40A0A0B4J280 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 AC044849.2-201ENST00000606596 710 ntBASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV40A0A0B4J280 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.08■■□□□ 1.12
TRAV40A0A0B4J280 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV40A0A0B4J280 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 RPS2-209ENST00000529806 993 ntTSL 3 BASIC22.04■■□□□ 1.12
TRAV40A0A0B4J280 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV40A0A0B4J280 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRAV40A0A0B4J280 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV40A0A0B4J280 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV40A0A0B4J280 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV40A0A0B4J280 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV40A0A0B4J280 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV40A0A0B4J280 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
TRAV40A0A0B4J280 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV40A0A0B4J280 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV40A0A0B4J280 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 AC120057.4-201ENST00000624722 1615 ntBASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.92■■□□□ 1.1
TRAV40A0A0B4J280 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV40A0A0B4J280 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV40A0A0B4J280 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV40A0A0B4J280 ABHD17AP4-201ENST00000411545 909 ntBASIC21.88■■□□□ 1.09
TRAV40A0A0B4J280 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 MIR7108-201ENST00000614319 87 ntBASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms