Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
DDX28Q9NUL7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 AC079630.1-202ENST00000618127 1840 ntBASIC19.68■□□□□ 0.74
DDX28Q9NUL7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 Z92544.1-202ENST00000571933 1220 ntBASIC19.68■□□□□ 0.74
DDX28Q9NUL7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
DDX28Q9NUL7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
DDX28Q9NUL7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.66■□□□□ 0.74
DDX28Q9NUL7 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.65■□□□□ 0.74
DDX28Q9NUL7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DDX28Q9NUL7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DDX28Q9NUL7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DDX28Q9NUL7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
DDX28Q9NUL7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 AC005703.6-201ENST00000623265 1329 ntBASIC19.64■□□□□ 0.73
DDX28Q9NUL7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
DDX28Q9NUL7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 AL391422.3-201ENST00000603791 2761 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
DDX28Q9NUL7 GUSBP5-201ENST00000418136 578 ntBASIC19.63■□□□□ 0.73
DDX28Q9NUL7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms