Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.41■■□□□ 1.025e-8■■■■■ 43.7
SF3B1O75533 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.59■□□□□ 0.895e-8■■■■■ 43.7
SF3B1O75533 ANK1-207ENST00000518061 892 ntTSL 316.55■□□□□ 0.242e-6■■■■■ 43.7
SF3B1O75533 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.35e-8■■■■■ 43.7
SF3B1O75533 BNIP3L-203ENST00000520077 922 ntTSL 1 (best)12.51□□□□□ -0.415e-8■■■■■ 43.7
SF3B1O75533 BNIP3L-207ENST00000523949 875 ntTSL 310.4□□□□□ -0.745e-8■■■■■ 43.7
SF3B1O75533 ANK1-214ENST00000524227 3825 ntTSL 1 (best)9.07□□□□□ -0.962e-6■■■■■ 43.7
SF3B1O75533 CUX1-220ENST00000607092 559 ntTSL 37.01□□□□□ -1.299e-7■■■■■ 43.6
SF3B1O75533 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.58■□□□□ 0.44e-7■■■■■ 43.6
SF3B1O75533 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.01□□□□□ -1.774e-6■■■■■ 43.6
SF3B1O75533 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.39□□□□□ -1.394e-6■■■■■ 43.6
SF3B1O75533 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.72■□□□□ 0.439e-7■■■■■ 43.6
SF3B1O75533 TOP3B-216ENST00000487485 725 ntTSL 311.49□□□□□ -0.573e-7■■■■■ 43.6
SF3B1O75533 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.94□□□□□ -1.463e-6■■■■■ 43.6
SF3B1O75533 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.149e-7■■■■■ 43.6
SF3B1O75533 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.079e-7■■■■■ 43.6
SF3B1O75533 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.239e-7■■■■■ 43.6
SF3B1O75533 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC13.17□□□□□ -0.39e-7■■■■■ 43.6
SF3B1O75533 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.87e-8■■■■■ 43.6
SF3B1O75533 RSL24D1-203ENST00000562993 940 ntTSL 34.21□□□□□ -1.737e-8■■■■■ 43.6
SF3B1O75533 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.683e-6■■■■■ 43.6
SF3B1O75533 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.873e-6■■■■■ 43.6
SF3B1O75533 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.98□□□□□ -2.093e-6■■■■■ 43.6
SF3B1O75533 MAT2A-203ENST00000465151 583 ntTSL 211.03□□□□□ -0.645e-9■■■■■ 43.5
SF3B1O75533 MAT2A-204ENST00000469221 691 ntTSL 27.52□□□□□ -1.25e-9■■■■■ 43.5
SF3B1O75533 UBR4-205ENST00000417040 6175 ntTSL 512.09□□□□□ -0.471e-6■■■■■ 43.5
SF3B1O75533 RNPEP-212ENST00000492587 780 ntTSL 523.52■■□□□ 1.364e-7■■■■■ 43.5
SF3B1O75533 RNPEP-209ENST00000479726 822 ntTSL 517.64■□□□□ 0.414e-7■■■■■ 43.5
SF3B1O75533 RNPEP-203ENST00000447312 1166 ntTSL 513.75□□□□□ -0.214e-7■■■■■ 43.5
SF3B1O75533 RNPEP-210ENST00000481780 847 ntTSL 512.18□□□□□ -0.464e-7■■■■■ 43.5
SF3B1O75533 RNPEP-207ENST00000478617 1069 ntTSL 512.13□□□□□ -0.474e-7■■■■■ 43.5
SF3B1O75533 RNPEP-213ENST00000492849 958 ntTSL 511.61□□□□□ -0.554e-7■■■■■ 43.5
SF3B1O75533 RNPEP-211ENST00000487116 851 ntTSL 310.37□□□□□ -0.754e-7■■■■■ 43.5
SF3B1O75533 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC12.99□□□□□ -0.332e-6■■■■■ 43.5
SF3B1O75533 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC10.52□□□□□ -0.732e-6■■■■■ 43.5
SF3B1O75533 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.482e-6■■■■■ 43.5
SF3B1O75533 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.69□□□□□ -1.52e-6■■■■■ 43.5
SF3B1O75533 STT3A-215ENST00000531599 973 ntTSL 38.94□□□□□ -0.983e-14■■■■■ 43.5
SF3B1O75533 STT3A-202ENST00000524639 582 ntTSL 26.32□□□□□ -1.43e-14■■■■■ 43.5
SF3B1O75533 STT3A-208ENST00000526726 582 ntTSL 33.8□□□□□ -1.83e-14■■■■■ 43.5
SF3B1O75533 UBE2D3-230ENST00000510599 484 ntTSL 24.47□□□□□ -1.692e-6■■■■■ 43.4
SF3B1O75533 UBE2D3-225ENST00000508476 601 ntTSL 32.33□□□□□ -2.042e-6■■■■■ 43.4
SF3B1O75533 PABPC1-218ENST00000521865 628 ntTSL 223.05■■□□□ 1.286e-6■■■■■ 43.4
SF3B1O75533 PABPC1-221ENST00000522720 593 ntTSL 417.88■□□□□ 0.456e-6■■■■■ 43.4
SF3B1O75533 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.096e-6■■■■■ 43.4
SF3B1O75533 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.19□□□□□ -0.146e-6■■■■■ 43.4
SF3B1O75533 PABPC1-205ENST00000518196 631 ntTSL 313.95□□□□□ -0.186e-6■■■■■ 43.4
SF3B1O75533 PABPC1-219ENST00000522387 2331 ntTSL 2 BASIC13.19□□□□□ -0.36e-6■■■■■ 43.4
SF3B1O75533 PABPC1-214ENST00000520142 754 ntTSL 312.11□□□□□ -0.476e-6■■■■■ 43.4
SF3B1O75533 PABPC1-203ENST00000517921 885 ntTSL 511.22□□□□□ -0.616e-6■■■■■ 43.4
SF3B1O75533 PABPC1-224ENST00000610907 1569 ntTSL 1 (best) BASIC10.82□□□□□ -0.686e-6■■■■■ 43.4
SF3B1O75533 PABPC1-222ENST00000523555 522 ntTSL 310.38□□□□□ -0.756e-6■■■■■ 43.4
SF3B1O75533 MLLT10-208ENST00000438473 1085 ntTSL 55.07□□□□□ -1.63e-6■■■■■ 43.4
SF3B1O75533 ARIH2-226ENST00000488963 517 ntTSL 321.93■■□□□ 1.13e-6■■■■■ 43.4
SF3B1O75533 ARIH2-202ENST00000420814 884 ntTSL 320.02■□□□□ 0.793e-6■■■■■ 43.4
SF3B1O75533 ARIH2-208ENST00000452882 598 ntTSL 317.62■□□□□ 0.413e-6■■■■■ 43.4
SF3B1O75533 ARIH2-217ENST00000474618 566 ntTSL 317.32■□□□□ 0.363e-6■■■■■ 43.4
SF3B1O75533 ARIH2-215ENST00000470296 457 ntTSL 1 (best)13.31□□□□□ -0.283e-6■■■■■ 43.4
SF3B1O75533 ARIH2-210ENST00000463204 522 ntTSL 511.8□□□□□ -0.523e-6■■■■■ 43.4
SF3B1O75533 MBOAT2-204ENST00000471753 1227 ntTSL 58.45□□□□□ -1.069e-6■■■■■ 43.4
SF3B1O75533 PPP2R2A-221ENST00000523964 567 ntTSL 42.49□□□□□ -2.017e-7■■■■■ 43.4
SF3B1O75533 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.313e-6■■■■■ 43.3
SF3B1O75533 RPRD1A-208ENST00000589050 1022 ntTSL 1 (best)16.66■□□□□ 0.262e-6■■■■■ 43.3
SF3B1O75533 RPRD1A-211ENST00000592674 566 ntTSL 416.66■□□□□ 0.262e-6■■■■■ 43.3
SF3B1O75533 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.451e-6■■■■■ 43.3
SF3B1O75533 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC11.93□□□□□ -0.51e-6■■■■■ 43.3
SF3B1O75533 RNF217-207ENST00000519565 10660 ntTSL 54.53□□□□□ -1.681e-6■■■■■ 43.3
SF3B1O75533 MICALL2-208ENST00000472100 5248 ntTSL 218.3■□□□□ 0.522e-6■■■■■ 43.3
SF3B1O75533 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.322e-6■■■■■ 43.3
SF3B1O75533 PPT2-EGFL8-207ENST00000585246 1051 ntAPPRIS ALT2 TSL 223.47■■□□□ 1.353e-6■■■■■ 43.3
SF3B1O75533 PPT2-EGFL8-206ENST00000583227 1540 ntAPPRIS ALT2 TSL 518.87■□□□□ 0.613e-6■■■■■ 43.3
SF3B1O75533 PPT2-EGFL8-204ENST00000453656 1327 ntTSL 218.65■□□□□ 0.583e-6■■■■■ 43.3
SF3B1O75533 KMT2D-203ENST00000547610 636 ntTSL 523.51■■□□□ 1.353e-6■■■■■ 43.3
SF3B1O75533 DEDD2-206ENST00000598090 463 ntTSL 321.73■■□□□ 1.073e-6■■■■■ 43.3
SF3B1O75533 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.27■□□□□ 0.991e-7■■■■■ 43.3
SF3B1O75533 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.081e-7■■■■■ 43.3
SF3B1O75533 C3orf33-203ENST00000482061 1926 ntTSL 214.29□□□□□ -0.121e-7■■■■■ 43.3
SF3B1O75533 C3orf33-204ENST00000486435 864 ntTSL 513.68□□□□□ -0.221e-7■■■■■ 43.3
SF3B1O75533 C3orf33-202ENST00000465810 733 ntTSL 513.45□□□□□ -0.261e-7■■■■■ 43.3
SF3B1O75533 DMXL1-209ENST00000510924 530 ntTSL 511.46□□□□□ -0.572e-6■■■■■ 43.3
SF3B1O75533 DMXL1-203ENST00000503802 1835 ntTSL 1 (best)10.95□□□□□ -0.662e-6■■■■■ 43.3
SF3B1O75533 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.84■■□□□ 1.253e-6■■■■■ 43.2
SF3B1O75533 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.043e-6■■■■■ 43.2
SF3B1O75533 TAOK1-205ENST00000583121 526 ntTSL 310.42□□□□□ -0.743e-6■■■■■ 43.2
SF3B1O75533 TAOK1-206ENST00000587277 353 ntTSL 23.11□□□□□ -1.913e-6■■■■■ 43.2
SF3B1O75533 ENO1-202ENST00000464920 2266 ntTSL 1 (best)13.62□□□□□ -0.234e-6■■■■■ 43.2
SF3B1O75533 PTK2-257ENST00000524357 535 ntTSL 422.76■■□□□ 1.233e-7■■■■■ 43.2
SF3B1O75533 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.14■□□□□ 0.813e-7■■■■■ 43.2
SF3B1O75533 PTK2-219ENST00000520045 602 ntTSL 420.14■□□□□ 0.813e-7■■■■■ 43.2
SF3B1O75533 PTK2-223ENST00000520828 574 ntTSL 49.01□□□□□ -0.973e-7■■■■■ 43.2
SF3B1O75533 PTK2-205ENST00000517453 571 ntTSL 48.35□□□□□ -1.073e-7■■■■■ 43.2
SF3B1O75533 PTK2-242ENST00000523067 488 ntTSL 48.34□□□□□ -1.073e-7■■■■■ 43.2
SF3B1O75533 ANKRD17-210ENST00000561029 2717 ntTSL 522.52■■□□□ 1.22e-6■■■■■ 43.2
SF3B1O75533 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.07■□□□□ 0.642e-6■■■■■ 43.2
SF3B1O75533 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.813e-6■■■■■ 43.1
SF3B1O75533 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.563e-6■■■■■ 43.1
SF3B1O75533 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.293e-6■■■■■ 43.1
SF3B1O75533 C21orf58-206ENST00000417060 1072 ntAPPRIS ALT2 TSL 1 (best)15.95■□□□□ 0.143e-6■■■■■ 43.1
SF3B1O75533 C21orf58-210ENST00000491666 1196 ntTSL 515.95■□□□□ 0.143e-6■■■■■ 43.1
SF3B1O75533 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.063e-6■■■■■ 43.1
Retrieved 100 of 46,956 protein–RNA pairs in 720.7 ms