RNA–Protein interactions for RNA: ENST00000518196.5

PABPC1-205, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 3

Gene PABPC1, Length 631 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-205ENST00000518196 AEBP2Q6ZN18 517 aaPredicted RBP32.01■■■□□ 2.71
PABPC1-205ENST00000518196 CHIC1Q5VXU3 224 aa31.58■■■□□ 2.65
PABPC1-205ENST00000518196 NISCHQ9Y2I1 1504 aa30.68■■■□□ 2.5
PABPC1-205ENST00000518196 PHF23Q9BUL5 403 aaPredicted RBP27.87■■■□□ 2.05
PABPC1-205ENST00000518196 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
PABPC1-205ENST00000518196 SENP3Q9H4L4 574 aaPredicted RBP27.02■■□□□ 1.92
PABPC1-205ENST00000518196 ABCC9O60706 1549 aa26.18■■□□□ 1.78
PABPC1-205ENST00000518196 PLPPR3Q6T4P5 718 aa25.82■■□□□ 1.72
PABPC1-205ENST00000518196 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
PABPC1-205ENST00000518196 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
PABPC1-205ENST00000518196 NACADO15069 1562 aa25.42■■□□□ 1.66
PABPC1-205ENST00000518196 DCAF1Q9Y4B6 1507 aa25.4■■□□□ 1.66
PABPC1-205ENST00000518196 MYO15BQ96JP2 1530 aa25.37■■□□□ 1.65
PABPC1-205ENST00000518196 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
PABPC1-205ENST00000518196 FOXD1Q16676 465 aa25.09■■□□□ 1.61
PABPC1-205ENST00000518196 UNC13AQ9UPW8 1703 aa24.78■■□□□ 1.56
PABPC1-205ENST00000518196 SCRIBQ14160 1630 aa24.77■■□□□ 1.56
PABPC1-205ENST00000518196 PABPN1Q86U42 306 aaKnown RBP eCLIP24.54■■□□□ 1.52
PABPC1-205ENST00000518196 BICRAQ9NZM4 1560 aa24.53■■□□□ 1.52
PABPC1-205ENST00000518196 ADRA2BP18089 450 aa24.52■■□□□ 1.52
PABPC1-205ENST00000518196 PPP6R1Q9UPN7 881 aa24.49■■□□□ 1.51
PABPC1-205ENST00000518196 SHROOM4Q9ULL8 1493 aa24.49■■□□□ 1.51
PABPC1-205ENST00000518196 EIF4G1Q04637 1599 aaKnown RBP23.87■■□□□ 1.41
PABPC1-205ENST00000518196 CECR2Q9BXF3 1484 aa23.84■■□□□ 1.41
PABPC1-205ENST00000518196 PIAS4Q8N2W9 510 aaPredicted RBP23.79■■□□□ 1.4
PABPC1-205ENST00000518196 BAZ1AQ9NRL2 1556 aaPredicted RBP23.77■■□□□ 1.4
PABPC1-205ENST00000518196 SMARCA4P51532 1647 aa23.73■■□□□ 1.39
PABPC1-205ENST00000518196 CC2D2AQ9P2K1 1620 aa23.7■■□□□ 1.38
PABPC1-205ENST00000518196 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
PABPC1-205ENST00000518196 MROH2BQ7Z745 1585 aa23.64■■□□□ 1.37
PABPC1-205ENST00000518196 SMARCA2P51531 1590 aa23.52■■□□□ 1.36
PABPC1-205ENST00000518196 RSF1Q96T23 1441 aaPredicted RBP23.51■■□□□ 1.35
PABPC1-205ENST00000518196 ATAD2BQ9ULI0 1458 aa23.5■■□□□ 1.35
PABPC1-205ENST00000518196 PEG3Q9GZU2 1588 aa23.48■■□□□ 1.35
PABPC1-205ENST00000518196 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
PABPC1-205ENST00000518196 WIZO95785 1651 aa23.42■■□□□ 1.34
PABPC1-205ENST00000518196 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
PABPC1-205ENST00000518196 HMGXB3Q12766 1538 aa23.35■■□□□ 1.33
PABPC1-205ENST00000518196 SUPT5HO00267 1087 aaKnown RBP23.27■■□□□ 1.32
PABPC1-205ENST00000518196 TOP2AP11388 1531 aaKnown RBP23.19■■□□□ 1.3
PABPC1-205ENST00000518196 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
PABPC1-205ENST00000518196 MSH5O43196 834 aa22.9■■□□□ 1.26
PABPC1-205ENST00000518196 PPP4R3CPQ6ZMV5 832 aa22.85■■□□□ 1.25
PABPC1-205ENST00000518196 KCNA4P22459 653 aa22.83■■□□□ 1.25
PABPC1-205ENST00000518196 CADPSQ9ULU8 1353 aa22.8■■□□□ 1.24
PABPC1-205ENST00000518196 LAMC3Q9Y6N6 1575 aa22.78■■□□□ 1.24
PABPC1-205ENST00000518196 NESP48681 1621 aa22.75■■□□□ 1.23
PABPC1-205ENST00000518196 CFTRP13569 1480 aa22.72■■□□□ 1.23
PABPC1-205ENST00000518196 PDS5BQ9NTI5 1447 aa22.63■■□□□ 1.21
PABPC1-205ENST00000518196 PRDM2Q13029 1718 aa22.61■■□□□ 1.21
PABPC1-205ENST00000518196 ERCC6Q03468 1493 aa22.57■■□□□ 1.2
PABPC1-205ENST00000518196 FANCD2Q9BXW9 1451 aa22.53■■□□□ 1.2
PABPC1-205ENST00000518196 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
PABPC1-205ENST00000518196 CEP164Q9UPV0 1460 aa22.47■■□□□ 1.19
PABPC1-205ENST00000518196 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
PABPC1-205ENST00000518196 NCBP3Q53F19 620 aaKnown RBP22.32■■□□□ 1.16
PABPC1-205ENST00000518196 THOC2Q8NI27 1593 aaKnown RBP22.31■■□□□ 1.16
PABPC1-205ENST00000518196 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
PABPC1-205ENST00000518196 ABCC8Q09428 1581 aa22.26■■□□□ 1.15
PABPC1-205ENST00000518196 URB2Q14146 1524 aaKnown RBP22.26■■□□□ 1.15
PABPC1-205ENST00000518196 WDR62O43379 1518 aa22.24■■□□□ 1.15
PABPC1-205ENST00000518196 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
PABPC1-205ENST00000518196 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
PABPC1-205ENST00000518196 CUX2O14529 1486 aa22.18■■□□□ 1.14
PABPC1-205ENST00000518196 WRNQ14191 1432 aaPredicted RBP eCLIP22.18■■□□□ 1.14
PABPC1-205ENST00000518196 CUX1P39880 1505 aa22.16■■□□□ 1.14
PABPC1-205ENST00000518196 MAPK8IP2Q13387 824 aaPredicted RBP22.14■■□□□ 1.13
PABPC1-205ENST00000518196 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
PABPC1-205ENST00000518196 SYNJ1O43426 1573 aa22.08■■□□□ 1.12
PABPC1-205ENST00000518196 BIVM-ERCC5R4GMW8 1640 aa22.07■■□□□ 1.12
PABPC1-205ENST00000518196 CNKSR2Q8WXI2 1034 aa22.07■■□□□ 1.12
PABPC1-205ENST00000518196 NPM3O75607 178 aaKnown RBP22.04■■□□□ 1.12
PABPC1-205ENST00000518196 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
PABPC1-205ENST00000518196 POLA1P09884 1462 aaPredicted RBP22.03■■□□□ 1.12
PABPC1-205ENST00000518196 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
PABPC1-205ENST00000518196 SOGA1O94964 1423 aa21.98■■□□□ 1.11
PABPC1-205ENST00000518196 TRIM41Q8WV44 630 aa21.97■■□□□ 1.11
PABPC1-205ENST00000518196 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
PABPC1-205ENST00000518196 TARBP1Q13395 1621 aaKnown RBP21.91■■□□□ 1.1
PABPC1-205ENST00000518196 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
PABPC1-205ENST00000518196 ZNF608Q9ULD9 1512 aaPredicted RBP21.81■■□□□ 1.08
PABPC1-205ENST00000518196 WDR97A6NE52 1622 aa21.81■■□□□ 1.08
PABPC1-205ENST00000518196 TDRD9Q8NDG6 1382 aaKnown RBP21.79■■□□□ 1.08
PABPC1-205ENST00000518196 SLC4A1APQ9BWU0 796 aaKnown RBP21.79■■□□□ 1.08
PABPC1-205ENST00000518196 AQRO60306 1485 aaKnown RBP eCLIP21.77■■□□□ 1.079e-6■■□□□ 13.1
PABPC1-205ENST00000518196 EIF4G3O43432 1585 aaKnown RBP21.75■■□□□ 1.07
PABPC1-205ENST00000518196 EHMT2Q96KQ7 1210 aa21.75■■□□□ 1.07
PABPC1-205ENST00000518196 GAPVD1Q14C86 1478 aa21.72■■□□□ 1.07
PABPC1-205ENST00000518196 ABCA5Q8WWZ7 1642 aa21.71■■□□□ 1.07
PABPC1-205ENST00000518196 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
PABPC1-205ENST00000518196 GRIN2BQ13224 1484 aa21.67■■□□□ 1.06
PABPC1-205ENST00000518196 PBRM1Q86U86 1689 aa21.65■■□□□ 1.06
PABPC1-205ENST00000518196 DMRT2Q9Y5R5 561 aa21.63■■□□□ 1.05
PABPC1-205ENST00000518196 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
PABPC1-205ENST00000518196 RUSC2Q8N2Y8 1516 aa21.58■■□□□ 1.04
PABPC1-205ENST00000518196 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
PABPC1-205ENST00000518196 MAGI1Q96QZ7 1491 aaPredicted RBP21.57■■□□□ 1.04
PABPC1-205ENST00000518196 IGF1RP08069 1367 aa21.56■■□□□ 1.04
PABPC1-205ENST00000518196 EEA1Q15075 1411 aa21.55■■□□□ 1.04
PABPC1-205ENST00000518196 RNF216Q9NWF9 866 aaPredicted RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms