Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRRC42Q9Y546 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.52■□□□□ 0.88
LRRC42Q9Y546 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRRC42Q9Y546 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRRC42Q9Y546 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRRC42Q9Y546 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
LRRC42Q9Y546 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 AC090877.2-201ENST00000558441 1738 ntBASIC20.51■□□□□ 0.87
LRRC42Q9Y546 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LRRC42Q9Y546 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LRRC42Q9Y546 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LRRC42Q9Y546 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 AC144652.1-201ENST00000609974 1624 ntBASIC20.48■□□□□ 0.87
LRRC42Q9Y546 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LRRC42Q9Y546 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 MIR3960-201ENST00000583311 91 ntBASIC20.47■□□□□ 0.87
LRRC42Q9Y546 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 GABARAPL3-202ENST00000624044 1851 ntBASIC20.47■□□□□ 0.87
LRRC42Q9Y546 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC42Q9Y546 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms