Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
MSH6P52701 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
MSH6P52701 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
MSH6P52701 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
MSH6P52701 OXCT2P1-201ENST00000447263 1535 ntBASIC30.54■■■□□ 2.48
MSH6P52701 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC30.54■■■□□ 2.48
MSH6P52701 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC30.54■■■□□ 2.48
MSH6P52701 AC010536.3-201ENST00000620306 533 ntBASIC30.54■■■□□ 2.48
MSH6P52701 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
MSH6P52701 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
MSH6P52701 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC30.53■■■□□ 2.48
MSH6P52701 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.53■■■□□ 2.48
MSH6P52701 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC30.53■■■□□ 2.48
MSH6P52701 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
MSH6P52701 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
MSH6P52701 MIPEPP3-201ENST00000412105 444 ntBASIC30.53■■■□□ 2.48
MSH6P52701 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC30.53■■■□□ 2.48
MSH6P52701 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
MSH6P52701 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC30.52■■■□□ 2.48
MSH6P52701 AC145676.1-201ENST00000514988 2004 ntBASIC30.52■■■□□ 2.48
MSH6P52701 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
MSH6P52701 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
MSH6P52701 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC30.52■■■□□ 2.48
MSH6P52701 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
MSH6P52701 MARS-234ENST00000630571 216 ntTSL 5 BASIC30.52■■■□□ 2.48
MSH6P52701 MARS-235ENST00000630803 183 ntTSL 3 BASIC30.52■■■□□ 2.48
MSH6P52701 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC30.52■■■□□ 2.48
MSH6P52701 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
MSH6P52701 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
MSH6P52701 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
MSH6P52701 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH6P52701 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
MSH6P52701 CASP6-205ENST00000505486 538 ntTSL 4 BASIC30.51■■■□□ 2.47
MSH6P52701 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
MSH6P52701 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC30.51■■■□□ 2.47
MSH6P52701 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC30.51■■■□□ 2.47
MSH6P52701 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH6P52701 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
MSH6P52701 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
MSH6P52701 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
MSH6P52701 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
MSH6P52701 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
MSH6P52701 ADM-205ENST00000528544 586 ntTSL 2 BASIC30.5■■■□□ 2.47
MSH6P52701 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC30.5■■■□□ 2.47
MSH6P52701 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC30.5■■■□□ 2.47
MSH6P52701 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC30.5■■■□□ 2.47
MSH6P52701 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.49■■■□□ 2.47
MSH6P52701 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.49■■■□□ 2.47
MSH6P52701 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC30.49■■■□□ 2.47
MSH6P52701 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
MSH6P52701 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
MSH6P52701 AC009237.3-201ENST00000393279 1427 ntBASIC30.48■■■□□ 2.47
MSH6P52701 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC30.48■■■□□ 2.47
MSH6P52701 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
MSH6P52701 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC30.48■■■□□ 2.47
MSH6P52701 MKRN4P-201ENST00000444706 1521 ntBASIC30.48■■■□□ 2.47
MSH6P52701 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC30.47■■■□□ 2.47
MSH6P52701 CYP2T1P-201ENST00000432607 1285 ntBASIC30.47■■■□□ 2.47
MSH6P52701 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC30.47■■■□□ 2.47
MSH6P52701 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.47■■■□□ 2.47
MSH6P52701 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
MSH6P52701 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
MSH6P52701 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH6P52701 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
MSH6P52701 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC30.46■■■□□ 2.47
MSH6P52701 RPS2P4-201ENST00000476944 856 ntBASIC30.46■■■□□ 2.47
MSH6P52701 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC30.46■■■□□ 2.47
MSH6P52701 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
MSH6P52701 BAALC-201ENST00000297574 801 ntTSL 3 BASIC30.45■■■□□ 2.47
MSH6P52701 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
MSH6P52701 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC30.45■■■□□ 2.47
MSH6P52701 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
MSH6P52701 PHB2-213ENST00000546111 858 ntTSL 2 BASIC30.45■■■□□ 2.47
MSH6P52701 AC092118.2-201ENST00000613495 667 ntBASIC30.45■■■□□ 2.47
MSH6P52701 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC30.45■■■□□ 2.47
MSH6P52701 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
MSH6P52701 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.46
MSH6P52701 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
MSH6P52701 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
MSH6P52701 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
MSH6P52701 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC30.44■■■□□ 2.46
MSH6P52701 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
MSH6P52701 AC013268.1-206ENST00000638368 961 ntBASIC30.44■■■□□ 2.46
MSH6P52701 AC112229.1-201ENST00000639295 961 ntBASIC30.44■■■□□ 2.46
MSH6P52701 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
MSH6P52701 MFF-207ENST00000409565 1548 ntTSL 2 BASIC30.44■■■□□ 2.46
MSH6P52701 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.44■■■□□ 2.46
MSH6P52701 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.43■■■□□ 2.46
MSH6P52701 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
MSH6P52701 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
MSH6P52701 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC30.43■■■□□ 2.46
MSH6P52701 ESRRAP1-201ENST00000400596 1257 ntBASIC30.43■■■□□ 2.46
MSH6P52701 UQCRFS1P1-201ENST00000435169 820 ntBASIC30.43■■■□□ 2.46
MSH6P52701 AL158047.1-201ENST00000445918 881 ntBASIC30.43■■■□□ 2.46
MSH6P52701 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms