Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CXCL1P09341 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CXCL1P09341 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CXCL1P09341 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL1P09341 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC16.85■□□□□ 0.29
CXCL1P09341 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL1P09341 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 AC244015.2-201ENST00000616358 1861 ntBASIC16.85■□□□□ 0.29
CXCL1P09341 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.85■□□□□ 0.29
CXCL1P09341 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.85■□□□□ 0.29
CXCL1P09341 ABHD17AP4-201ENST00000411545 909 ntBASIC16.85■□□□□ 0.29
CXCL1P09341 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CXCL1P09341 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CXCL1P09341 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.84■□□□□ 0.29
CXCL1P09341 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CXCL1P09341 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC16.84■□□□□ 0.29
CXCL1P09341 AC026202.3-201ENST00000600805 1127 ntBASIC16.84■□□□□ 0.29
CXCL1P09341 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.84■□□□□ 0.29
CXCL1P09341 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.84■□□□□ 0.29
CXCL1P09341 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CXCL1P09341 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
CXCL1P09341 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CXCL1P09341 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CXCL1P09341 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CXCL1P09341 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CXCL1P09341 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL1P09341 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CXCL1P09341 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL1P09341 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.83■□□□□ 0.28
CXCL1P09341 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CXCL1P09341 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CXCL1P09341 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL1P09341 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL1P09341 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CXCL1P09341 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC16.82■□□□□ 0.28
CXCL1P09341 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL1P09341 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL1P09341 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL1P09341 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CXCL1P09341 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL1P09341 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL1P09341 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL1P09341 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL1P09341 AC090877.2-201ENST00000558441 1738 ntBASIC16.81■□□□□ 0.28
CXCL1P09341 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CXCL1P09341 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL1P09341 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CXCL1P09341 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
CXCL1P09341 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CXCL1P09341 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL1P09341 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC16.8■□□□□ 0.28
CXCL1P09341 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.8■□□□□ 0.28
CXCL1P09341 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms