Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 CREB1-216ENST00000494094 580 ntTSL 25.9□□□□□ -1.463e-7■□□□□ 11.3
CDC40O60508 CREB1-207ENST00000445803 651 ntTSL 42.16□□□□□ -2.063e-7■□□□□ 11.3
CDC40O60508 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.16□□□□□ -0.35e-11■□□□□ 11.3
CDC40O60508 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC10.42□□□□□ -0.745e-11■□□□□ 11.3
CDC40O60508 SNHG1-209ENST00000538654 2768 ntTSL 28.21□□□□□ -1.15e-11■□□□□ 11.3
CDC40O60508 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC7.05□□□□□ -1.285e-11■□□□□ 11.3
CDC40O60508 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.92□□□□□ -1.465e-11■□□□□ 11.3
CDC40O60508 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.6□□□□□ -1.515e-11■□□□□ 11.3
CDC40O60508 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.85□□□□□ -1.635e-11■□□□□ 11.3
CDC40O60508 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.83□□□□□ -1.645e-11■□□□□ 11.3
CDC40O60508 SNHG1-214ENST00000540865 784 ntTSL 54.3□□□□□ -1.725e-11■□□□□ 11.3
CDC40O60508 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.98□□□□□ -1.775e-11■□□□□ 11.3
CDC40O60508 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.89□□□□□ -1.795e-11■□□□□ 11.3
CDC40O60508 SNHG1-220ENST00000544550 636 ntTSL 23.84□□□□□ -1.795e-11■□□□□ 11.3
CDC40O60508 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.62□□□□□ -1.835e-11■□□□□ 11.3
CDC40O60508 SNHG1-203ENST00000537024 532 ntTSL 53.36□□□□□ -1.875e-11■□□□□ 11.3
CDC40O60508 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.1□□□□□ -1.915e-11■□□□□ 11.3
CDC40O60508 SNHG1-202ENST00000535689 550 ntTSL 22.62□□□□□ -1.995e-11■□□□□ 11.3
CDC40O60508 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.18□□□□□ -2.065e-11■□□□□ 11.3
CDC40O60508 SNHG1-224ENST00000545688 610 ntTSL 32.14□□□□□ -2.075e-11■□□□□ 11.3
CDC40O60508 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.721e-6■□□□□ 11.2
CDC40O60508 AMDHD2-212ENST00000566706 940 ntTSL 520.64■□□□□ 0.895e-7■□□□□ 11.2
CDC40O60508 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.685e-7■□□□□ 11.2
CDC40O60508 ASPSCR1-210ENST00000581608 2387 ntTSL 218.55■□□□□ 0.569e-10■□□□□ 11.2
CDC40O60508 AMDHD2-209ENST00000563633 1117 ntTSL 518.39■□□□□ 0.535e-7■□□□□ 11.2
CDC40O60508 AMDHD2-205ENST00000563145 859 ntTSL 218.08■□□□□ 0.485e-7■□□□□ 11.2
CDC40O60508 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.45e-7■□□□□ 11.2
CDC40O60508 AMDHD2-207ENST00000563453 555 ntTSL 215.89■□□□□ 0.135e-7■□□□□ 11.2
CDC40O60508 SH3PXD2A-204ENST00000420222 3251 ntTSL 213.56□□□□□ -0.245e-7■□□□□ 11.2
CDC40O60508 DGCR2-202ENST00000389262 4814 ntTSL 1 (best)13.5□□□□□ -0.255e-7■□□□□ 11.2
CDC40O60508 AMDHD2-206ENST00000563444 529 ntTSL 213.27□□□□□ -0.295e-7■□□□□ 11.2
CDC40O60508 AMDHD2-204ENST00000561487 701 ntTSL 212.67□□□□□ -0.385e-7■□□□□ 11.2
CDC40O60508 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.415e-7■□□□□ 11.2
CDC40O60508 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.5□□□□□ -0.415e-7■□□□□ 11.2
CDC40O60508 PTMA-210ENST00000467816 378 ntTSL 212.27□□□□□ -0.455e-7■□□□□ 11.2
CDC40O60508 SH3PXD2A-201ENST00000315994 5504 ntTSL 1 (best)12.15□□□□□ -0.475e-7■□□□□ 11.2
CDC40O60508 ASPSCR1-205ENST00000578236 3277 ntTSL 212.08□□□□□ -0.479e-10■□□□□ 11.2
CDC40O60508 DGCR2-205ENST00000537045 4361 ntTSL 2 BASIC11.05□□□□□ -0.645e-7■□□□□ 11.2
CDC40O60508 FGFR4-216ENST00000514472 552 ntTSL 420.7■□□□□ 0.97e-7■□□□□ 11.2
CDC40O60508 FGFR4-214ENST00000513166 594 ntTSL 419.49■□□□□ 0.717e-7■□□□□ 11.2
CDC40O60508 FGFR4-209ENST00000507708 476 ntTSL 319.33■□□□□ 0.687e-7■□□□□ 11.2
CDC40O60508 FGFR4-212ENST00000510911 709 ntTSL 419.33■□□□□ 0.687e-7■□□□□ 11.2
CDC40O60508 FGFR4-204ENST00000426612 712 ntTSL 1 (best)18.94■□□□□ 0.627e-7■□□□□ 11.2
CDC40O60508 FGFR4-211ENST00000509511 1341 ntTSL 1 (best)18.03■□□□□ 0.487e-7■□□□□ 11.2
CDC40O60508 FGFR4-208ENST00000503708 770 ntTSL 417.43■□□□□ 0.387e-7■□□□□ 11.2
CDC40O60508 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.177e-7■□□□□ 11.2
CDC40O60508 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.137e-7■□□□□ 11.2
CDC40O60508 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.117e-7■□□□□ 11.2
CDC40O60508 FGFR4-205ENST00000430285 713 ntTSL 1 (best)15.65■□□□□ 0.17e-7■□□□□ 11.2
CDC40O60508 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.047e-7■□□□□ 11.2
CDC40O60508 SRRM2-213ENST00000573311 732 ntTSL 213.68□□□□□ -0.221e-7■□□□□ 11.2
CDC40O60508 MIR6769A-201ENST00000617340 73 ntBASIC13.17□□□□□ -0.35e-6■□□□□ 11.2
CDC40O60508 HNRNPH1-238ENST00000521116 806 ntTSL 419.33■□□□□ 0.683e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-228ENST00000515714 690 ntTSL 417.37■□□□□ 0.373e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-245ENST00000523137 1563 ntTSL 417.25■□□□□ 0.353e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-207ENST00000503105 559 ntTSL 316.37■□□□□ 0.213e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-212ENST00000505087 592 ntTSL 316.37■□□□□ 0.213e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.27■□□□□ 0.043e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-208ENST00000503664 569 ntTSL 415.27■□□□□ 0.043e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-225ENST00000515158 850 ntTSL 414.7□□□□□ -0.063e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-226ENST00000515446 368 ntTSL 213.94□□□□□ -0.183e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-213ENST00000505811 1155 ntTSL 513.82□□□□□ -0.23e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-249ENST00000524180 997 ntTSL 513.11□□□□□ -0.313e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-220ENST00000513225 805 ntTSL 412.95□□□□□ -0.343e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-224ENST00000514731 1371 ntTSL 212.76□□□□□ -0.373e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-215ENST00000508103 610 ntTSL 212.49□□□□□ -0.413e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-209ENST00000504348 594 ntTSL 412.48□□□□□ -0.413e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-211ENST00000504779 792 ntTSL 512.35□□□□□ -0.433e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-214ENST00000506721 602 ntTSL 512.27□□□□□ -0.453e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-233ENST00000519455 451 ntTSL 412.2□□□□□ -0.463e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-217ENST00000510431 620 ntTSL 212.18□□□□□ -0.463e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-234ENST00000519707 582 ntTSL 212.18□□□□□ -0.463e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-222ENST00000513972 761 ntTSL 211.65□□□□□ -0.543e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-232ENST00000519056 530 ntTSL 411.22□□□□□ -0.613e-23■□□□□ 11.1
CDC40O60508 HNRNPH1-219ENST00000512273 501 ntTSL 48□□□□□ -1.133e-23■□□□□ 11.1
CDC40O60508 ANKRD11-213ENST00000567736 2750 ntTSL 213.61□□□□□ -0.239e-7■□□□□ 11.1
CDC40O60508 CHPT1-210ENST00000552351 1524 ntTSL 224.59■■□□□ 1.534e-9■□□□□ 11.1
CDC40O60508 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.474e-9■□□□□ 11.1
CDC40O60508 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.424e-9■□□□□ 11.1
CDC40O60508 CHPT1-204ENST00000549128 1552 ntTSL 523.95■■□□□ 1.424e-9■□□□□ 11.1
CDC40O60508 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.134e-9■□□□□ 11.1
CDC40O60508 CMC2-222ENST00000570086 801 ntTSL 314.32□□□□□ -0.124e-9■□□□□ 11.1
CDC40O60508 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.32□□□□□ -0.124e-9■□□□□ 11.1
CDC40O60508 CMC2-210ENST00000565514 262 ntTSL 313.01□□□□□ -0.334e-9■□□□□ 11.1
CDC40O60508 CMC2-209ENST00000565108 399 ntTSL 2 BASIC12.89□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-204ENST00000562713 573 ntTSL 3 BASIC12.89□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-220ENST00000569187 612 ntTSL 212.89□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-205ENST00000562828 438 ntTSL 212.85□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-224ENST00000630396 481 ntTSL 5 BASIC12.85□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-211ENST00000565613 663 ntTSL 512.85□□□□□ -0.354e-9■□□□□ 11.1
CDC40O60508 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.424e-9■□□□□ 11.1
CDC40O60508 EEF1D-214ENST00000526135 535 ntTSL 211.86□□□□□ -0.514e-9■□□□□ 11.1
CDC40O60508 CMC2-202ENST00000486645 766 ntTSL 3 BASIC11.64□□□□□ -0.554e-9■□□□□ 11.1
CDC40O60508 CMC2-219ENST00000568228 825 ntTSL 311.22□□□□□ -0.614e-9■□□□□ 11.1
CDC40O60508 CMC2-218ENST00000567593 919 ntTSL 310.33□□□□□ -0.764e-9■□□□□ 11.1
CDC40O60508 CMC2-223ENST00000570195 871 ntTSL 3 BASIC10.33□□□□□ -0.764e-9■□□□□ 11.1
CDC40O60508 CMC2-207ENST00000564174 424 ntTSL 3 BASIC9.17□□□□□ -0.944e-9■□□□□ 11.1
CDC40O60508 CHPT1-208ENST00000552215 4342 ntTSL 1 (best)7.71□□□□□ -1.184e-9■□□□□ 11.1
CDC40O60508 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC7.16□□□□□ -1.264e-9■□□□□ 11.1
CDC40O60508 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.555e-7■□□□□ 11.1
Retrieved 100 of 5,364 protein–RNA pairs in 48.8 ms