RNA–Protein interactions for RNA: ENST00000315994.6

SH3PXD2A-201, Transcript of SH3 and PX domains 2A, humanhuman

TSL 1 (best)

Gene SH3PXD2A, Length 5,504 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3PXD2A-201ENST00000315994 NISCHQ9Y2I1 1504 aa23.18■■□□□ 1.3
SH3PXD2A-201ENST00000315994 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
SH3PXD2A-201ENST00000315994 SUPT5HO00267 1087 aaKnown RBP21.56■■□□□ 1.04
SH3PXD2A-201ENST00000315994 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
SH3PXD2A-201ENST00000315994 EHMT2Q96KQ7 1210 aa20.51■□□□□ 0.87
SH3PXD2A-201ENST00000315994 APLP2Q06481 763 aa20.24■□□□□ 0.83
SH3PXD2A-201ENST00000315994 FAM9AQ8IZU1 332 aaPredicted RBP20.22■□□□□ 0.83
SH3PXD2A-201ENST00000315994 TRIM41Q8WV44 630 aa20.12■□□□□ 0.81
SH3PXD2A-201ENST00000315994 TTBK1Q5TCY1 1321 aaPredicted RBP19.78■□□□□ 0.76
SH3PXD2A-201ENST00000315994 ABCC9O60706 1549 aa19.77■□□□□ 0.76
SH3PXD2A-201ENST00000315994 RANGAP1P46060 587 aaPredicted RBP19.77■□□□□ 0.75
SH3PXD2A-201ENST00000315994 PCGF6Q9BYE7 350 aa19.76■□□□□ 0.75
SH3PXD2A-201ENST00000315994 UBTFP17480 764 aaKnown RBP19.74■□□□□ 0.75
SH3PXD2A-201ENST00000315994 ATP1B4Q9UN42 357 aaPredicted RBP19.59■□□□□ 0.73
SH3PXD2A-201ENST00000315994 PELP1Q8IZL8 1130 aaKnown RBP19.51■□□□□ 0.71
SH3PXD2A-201ENST00000315994 ZEB1P37275 1124 aaPredicted RBP19.5■□□□□ 0.71
SH3PXD2A-201ENST00000315994 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
SH3PXD2A-201ENST00000315994 CCER1Q8TC90 406 aaPredicted RBP19.42■□□□□ 0.7
SH3PXD2A-201ENST00000315994 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.74e-6■□□□□ 9.3
SH3PXD2A-201ENST00000315994 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.69
SH3PXD2A-201ENST00000315994 ZCCHC6Q5VYS8 1495 aaKnown RBP19.26■□□□□ 0.67
SH3PXD2A-201ENST00000315994 MYT1Q01538 1121 aa19.25■□□□□ 0.67
SH3PXD2A-201ENST00000315994 TRIM26Q12899 539 aaPredicted RBP19.22■□□□□ 0.67
SH3PXD2A-201ENST00000315994 LOC105371045A0A1W2PR82 267 aa19.2■□□□□ 0.66
SH3PXD2A-201ENST00000315994 PPARGC1BQ86YN6 1023 aaKnown RBP19.2■□□□□ 0.66
SH3PXD2A-201ENST00000315994 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
SH3PXD2A-201ENST00000315994 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
SH3PXD2A-201ENST00000315994 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.64
SH3PXD2A-201ENST00000315994 CENPBP07199 599 aaPredicted RBP19.02■□□□□ 0.63
SH3PXD2A-201ENST00000315994 ITGAEP38570 1179 aa18.92■□□□□ 0.62
SH3PXD2A-201ENST00000315994 MYT1LQ9UL68 1186 aa18.84■□□□□ 0.61
SH3PXD2A-201ENST00000315994 HRCP23327 699 aa18.8■□□□□ 0.6
SH3PXD2A-201ENST00000315994 RB1CC1Q8TDY2 1594 aa18.78■□□□□ 0.6
SH3PXD2A-201ENST00000315994 NACADO15069 1562 aa18.67■□□□□ 0.58
SH3PXD2A-201ENST00000315994 CSRNP3Q8WYN3 585 aa18.64■□□□□ 0.57
SH3PXD2A-201ENST00000315994 YTHDC1Q96MU7 727 aaKnown RBP18.64■□□□□ 0.57
SH3PXD2A-201ENST00000315994 FAM50AQ14320 339 aaKnown RBP18.61■□□□□ 0.57
SH3PXD2A-201ENST00000315994 NEFLP07196 543 aa18.6■□□□□ 0.57
SH3PXD2A-201ENST00000315994 FBLN2P98095 1184 aa18.55■□□□□ 0.56
SH3PXD2A-201ENST00000315994 DCAF1Q9Y4B6 1507 aa18.49■□□□□ 0.55
SH3PXD2A-201ENST00000315994 POLR3GLQ9BT43 218 aa18.48■□□□□ 0.55
SH3PXD2A-201ENST00000315994 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
SH3PXD2A-201ENST00000315994 RSF1Q96T23 1441 aaPredicted RBP18.42■□□□□ 0.54
SH3PXD2A-201ENST00000315994 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
SH3PXD2A-201ENST00000315994 P3H3Q8IVL6 736 aa18.39■□□□□ 0.53
SH3PXD2A-201ENST00000315994 NEUROD1Q13562 356 aa18.29■□□□□ 0.52
SH3PXD2A-201ENST00000315994 DIEXFQ68CQ4 756 aaKnown RBP18.26■□□□□ 0.51
SH3PXD2A-201ENST00000315994 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
SH3PXD2A-201ENST00000315994 CDK11AQ9UQ88 783 aaPredicted RBP18.25■□□□□ 0.51
SH3PXD2A-201ENST00000315994 BAZ1AQ9NRL2 1556 aaPredicted RBP18.23■□□□□ 0.51
SH3PXD2A-201ENST00000315994 ARID3CA6NKF2 412 aa18.23■□□□□ 0.51
SH3PXD2A-201ENST00000315994 CNGB1Q14028 1251 aaPredicted RBP18.2■□□□□ 0.5
SH3PXD2A-201ENST00000315994 SLC4A1APQ9BWU0 796 aaKnown RBP18.15■□□□□ 0.5
SH3PXD2A-201ENST00000315994 EEA1Q15075 1411 aa18.15■□□□□ 0.5
SH3PXD2A-201ENST00000315994 ZNF777Q9ULD5 760 aaPredicted RBP18.11■□□□□ 0.49
SH3PXD2A-201ENST00000315994 WRNQ14191 1432 aaPredicted RBP eCLIP18.11■□□□□ 0.49
SH3PXD2A-201ENST00000315994 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
SH3PXD2A-201ENST00000315994 ZNF326Q5BKZ1 582 aaKnown RBP18.09■□□□□ 0.49
SH3PXD2A-201ENST00000315994 CLIP1P30622 1438 aa18.03■□□□□ 0.48
SH3PXD2A-201ENST00000315994 GOLGA3Q08378 1498 aa18.03■□□□□ 0.48
SH3PXD2A-201ENST00000315994 ZNF316A6NFI3 1004 aaPredicted RBP18.02■□□□□ 0.48
SH3PXD2A-201ENST00000315994 MYO15BQ96JP2 1530 aa18.02■□□□□ 0.47
SH3PXD2A-201ENST00000315994 CHMP7Q8WUX9 453 aaPredicted RBP18.01■□□□□ 0.47
SH3PXD2A-201ENST00000315994 ANP32CO43423 234 aa18■□□□□ 0.47
SH3PXD2A-201ENST00000315994 KIF27Q86VH2 1401 aa17.96■□□□□ 0.47
SH3PXD2A-201ENST00000315994 NPM1P06748 294 aaKnown RBP eCLIP17.95■□□□□ 0.46
SH3PXD2A-201ENST00000315994 MTUS2Q5JR59 1369 aa17.92■□□□□ 0.46
SH3PXD2A-201ENST00000315994 CEP162Q5TB80 1403 aa17.91■□□□□ 0.46
SH3PXD2A-201ENST00000315994 MROH2BQ7Z745 1585 aa17.91■□□□□ 0.46
SH3PXD2A-201ENST00000315994 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
SH3PXD2A-201ENST00000315994 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
SH3PXD2A-201ENST00000315994 DAXXQ9UER7 740 aaPredicted RBP17.87■□□□□ 0.45
SH3PXD2A-201ENST00000315994 TONSLQ96HA7 1378 aa17.86■□□□□ 0.45
SH3PXD2A-201ENST00000315994 TNIKQ9UKE5 1360 aa17.86■□□□□ 0.45
SH3PXD2A-201ENST00000315994 ERCC6Q03468 1493 aa17.81■□□□□ 0.44
SH3PXD2A-201ENST00000315994 BCANQ96GW7 911 aa17.8■□□□□ 0.44
SH3PXD2A-201ENST00000315994 CHIC2Q9UKJ5 165 aa17.8■□□□□ 0.44
SH3PXD2A-201ENST00000315994 CCDC88BA6NC98 1476 aa17.8■□□□□ 0.44
SH3PXD2A-201ENST00000315994 ESF1Q9H501 851 aaKnown RBP17.79■□□□□ 0.44
SH3PXD2A-201ENST00000315994 TSPY4P0CV99 314 aa17.78■□□□□ 0.44
SH3PXD2A-201ENST00000315994 TSPY10P0CW01 314 aa17.78■□□□□ 0.44
SH3PXD2A-201ENST00000315994 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
SH3PXD2A-201ENST00000315994 PLEKHD1A6NEE1 506 aa17.7■□□□□ 0.42
SH3PXD2A-201ENST00000315994 GTF3C3Q9Y5Q9 886 aa17.69■□□□□ 0.42
SH3PXD2A-201ENST00000315994 CUX2O14529 1486 aa17.68■□□□□ 0.42
SH3PXD2A-201ENST00000315994 WIZO95785 1651 aa17.67■□□□□ 0.42
SH3PXD2A-201ENST00000315994 CHGAP10645 457 aaKnown RBP17.67■□□□□ 0.42
SH3PXD2A-201ENST00000315994 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.67■□□□□ 0.428e-7■■□□□ 14
SH3PXD2A-201ENST00000315994 CLSPNQ9HAW4 1339 aa17.66■□□□□ 0.42
SH3PXD2A-201ENST00000315994 SOGA1O94964 1423 aa17.66■□□□□ 0.42
SH3PXD2A-201ENST00000315994 STAG3Q9UJ98 1225 aa17.66■□□□□ 0.42
SH3PXD2A-201ENST00000315994 CARMIL1Q5VZK9 1371 aa17.65■□□□□ 0.42
SH3PXD2A-201ENST00000315994 ACIN1Q9UKV3 1341 aaKnown RBP17.64■□□□□ 0.41
SH3PXD2A-201ENST00000315994 NEFMP07197 916 aa17.62■□□□□ 0.41
SH3PXD2A-201ENST00000315994 ABCC8Q09428 1581 aa17.62■□□□□ 0.41
SH3PXD2A-201ENST00000315994 PDS5BQ9NTI5 1447 aa17.62■□□□□ 0.41
SH3PXD2A-201ENST00000315994 RRP7BPQ9NSQ0 103 aa17.6■□□□□ 0.41
SH3PXD2A-201ENST00000315994 FHAD1B1AJZ9 1412 aa17.59■□□□□ 0.41
SH3PXD2A-201ENST00000315994 KCNH8Q96L42 1107 aa17.59■□□□□ 0.41
SH3PXD2A-201ENST00000315994 SMARCA4P51532 1647 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms