Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA4Q9Y5G9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA4Q9Y5G9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 AC034268.1-201ENST00000441047 882 ntBASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 AC009086.3-201ENST00000623486 1008 ntBASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.36■■□□□ 1.01
PCDHGA4Q9Y5G9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 BX842568.3-201ENST00000418104 571 ntBASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 DUSP8P3-201ENST00000399571 1760 ntBASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PCDHGA4Q9Y5G9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 DUSP8P5-201ENST00000422884 1815 ntBASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 AC006455.2-201ENST00000429931 906 ntBASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 IKBKGP1-201ENST00000612193 1073 ntBASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PCDHGA4Q9Y5G9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.33■■□□□ 1.01
PCDHGA4Q9Y5G9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
PCDHGA4Q9Y5G9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA4Q9Y5G9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms