Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
COL28A1Q2UY09 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.02■□□□□ 0.95
COL28A1Q2UY09 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.02■□□□□ 0.95
COL28A1Q2UY09 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL28A1Q2UY09 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL28A1Q2UY09 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.01■□□□□ 0.95
COL28A1Q2UY09 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
COL28A1Q2UY09 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL28A1Q2UY09 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
COL28A1Q2UY09 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL28A1Q2UY09 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21■□□□□ 0.95
COL28A1Q2UY09 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21■□□□□ 0.95
COL28A1Q2UY09 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21■□□□□ 0.95
COL28A1Q2UY09 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
COL28A1Q2UY09 AC087239.1-201ENST00000622671 572 ntBASIC21■□□□□ 0.95
COL28A1Q2UY09 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21■□□□□ 0.95
COL28A1Q2UY09 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL28A1Q2UY09 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL28A1Q2UY09 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.99■□□□□ 0.95
COL28A1Q2UY09 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COL28A1Q2UY09 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 AL161729.1-201ENST00000604104 1402 ntBASIC20.97■□□□□ 0.95
COL28A1Q2UY09 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 AC011767.1-201ENST00000617410 1153 ntBASIC20.97■□□□□ 0.95
COL28A1Q2UY09 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.97■□□□□ 0.95
COL28A1Q2UY09 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 AC079834.2-201ENST00000609776 1949 ntBASIC20.96■□□□□ 0.95
COL28A1Q2UY09 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL28A1Q2UY09 AP004607.4-201ENST00000530158 1459 ntBASIC20.95■□□□□ 0.94
COL28A1Q2UY09 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 AC105233.4-201ENST00000642045 216 ntBASIC20.95■□□□□ 0.94
COL28A1Q2UY09 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL28A1Q2UY09 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms