Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.572e-6■■□□□ 11.8
SFPQP23246 SRPK2-211ENST00000482862 329 ntTSL 523.92■■□□□ 1.423e-6■■□□□ 11.8
SFPQP23246 SRPK2-212ENST00000482897 715 ntTSL 523.72■■□□□ 1.393e-6■■□□□ 11.8
SFPQP23246 SRPK2-206ENST00000465112 568 ntTSL 316.09■□□□□ 0.173e-6■■□□□ 11.8
SFPQP23246 SRPK2-203ENST00000460391 666 ntTSL 215.41■□□□□ 0.063e-6■■□□□ 11.8
SFPQP23246 SRPK2-204ENST00000462282 505 ntTSL 313.72□□□□□ -0.213e-6■■□□□ 11.8
SFPQP23246 SRPK2-202ENST00000393651 3650 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.613e-6■■□□□ 11.8
SFPQP23246 HDLBP-217ENST00000430918 612 ntTSL 311.47□□□□□ -0.572e-6■■□□□ 11.8
SFPQP23246 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.742e-6■■□□□ 11.7
SFPQP23246 TJP2-211ENST00000636247 3725 ntTSL 1 (best)15.28■□□□□ 0.042e-6■■□□□ 11.7
SFPQP23246 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.112e-6■■□□□ 11.7
SFPQP23246 PRDM10-206ENST00000527581 620 ntTSL 318.67■□□□□ 0.582e-6■■□□□ 11.7
SFPQP23246 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC15.47■□□□□ 0.072e-6■■□□□ 11.7
SFPQP23246 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.072e-6■■□□□ 11.7
SFPQP23246 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC11.5□□□□□ -0.572e-6■■□□□ 11.7
SFPQP23246 PRDM10-208ENST00000531431 528 ntTSL 45.85□□□□□ -1.472e-6■■□□□ 11.7
SFPQP23246 FNDC3B-206ENST00000443501 678 ntTSL 39.01□□□□□ -0.978e-7■■□□□ 11.7
SFPQP23246 KLHDC4-218ENST00000567298 4572 ntTSL 517.46■□□□□ 0.392e-6■■□□□ 11.7
SFPQP23246 KLHDC4-223ENST00000568499 445 ntTSL 316.45■□□□□ 0.222e-6■■□□□ 11.7
SFPQP23246 NCOR2-215ENST00000458234 4675 ntAPPRIS ALT2 TSL 1 (best)16.03■□□□□ 0.165e-6■■□□□ 11.7
SFPQP23246 SLC39A14-210ENST00000520832 578 ntTSL 49.45□□□□□ -0.96e-7■■□□□ 11.7
SFPQP23246 NFE2L2-205ENST00000430047 451 ntTSL 326.06■■□□□ 1.766e-7■■□□□ 11.7
SFPQP23246 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC18.28■□□□□ 0.526e-7■■□□□ 11.7
SFPQP23246 NFE2L2-210ENST00000462023 521 ntTSL 217.43■□□□□ 0.386e-7■■□□□ 11.7
SFPQP23246 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC11.91□□□□□ -0.56e-7■■□□□ 11.7
SFPQP23246 NFE2L2-214ENST00000588123 814 ntTSL 510.49□□□□□ -0.736e-7■■□□□ 11.7
SFPQP23246 NFE2L2-213ENST00000586532 942 ntTSL 55.07□□□□□ -1.66e-7■■□□□ 11.7
SFPQP23246 FNDC3B-209ENST00000478016 554 ntTSL 43.77□□□□□ -1.819e-7■■□□□ 11.7
SFPQP23246 WDR33-203ENST00000408998 583 ntTSL 422.71■■□□□ 1.232e-6■■□□□ 11.7
SFPQP23246 WDR33-204ENST00000409658 3104 ntTSL 1 (best) BASIC12.52□□□□□ -0.42e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.41□□□□□ -1.383e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.493e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.57□□□□□ -1.523e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.31□□□□□ -1.563e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.593e-6■■□□□ 11.7
SFPQP23246 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.69□□□□□ -1.663e-6■■□□□ 11.7
SFPQP23246 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.685e-7■■□□□ 11.7
SFPQP23246 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.765e-7■■□□□ 11.7
SFPQP23246 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.72■■□□□ 1.717e-8■■□□□ 11.6
SFPQP23246 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.72■■□□□ 1.717e-8■■□□□ 11.6
SFPQP23246 MTG1-204ENST00000473735 2212 ntTSL 524.5■■□□□ 1.517e-8■■□□□ 11.6
SFPQP23246 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.477e-8■■□□□ 11.6
SFPQP23246 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.37e-8■■□□□ 11.6
SFPQP23246 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.17e-8■■□□□ 11.6
SFPQP23246 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.057e-8■■□□□ 11.6
SFPQP23246 PCMT1-209ENST00000494411 600 ntTSL 421.26■□□□□ 0.997e-8■■□□□ 11.6
SFPQP23246 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.847e-8■■□□□ 11.6
SFPQP23246 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.23■□□□□ 0.837e-8■■□□□ 11.6
SFPQP23246 PCMT1-207ENST00000484601 1095 ntTSL 519.95■□□□□ 0.787e-8■■□□□ 11.6
SFPQP23246 PCMT1-204ENST00000460828 582 ntTSL 519.07■□□□□ 0.647e-8■■□□□ 11.6
SFPQP23246 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.647e-8■■□□□ 11.6
SFPQP23246 IQSEC1-202ENST00000473088 545 ntTSL 418.95■□□□□ 0.627e-8■■□□□ 11.6
SFPQP23246 TNRC6A-209ENST00000562829 277 ntTSL 218.81■□□□□ 0.67e-8■■□□□ 11.6
SFPQP23246 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.557e-8■■□□□ 11.6
SFPQP23246 MTG1-202ENST00000432508 953 ntTSL 218.43■□□□□ 0.547e-8■■□□□ 11.6
SFPQP23246 PCMT1-210ENST00000495487 548 ntTSL 317.06■□□□□ 0.327e-8■■□□□ 11.6
SFPQP23246 MTG1-203ENST00000460848 2730 ntTSL 216.25■□□□□ 0.197e-8■■□□□ 11.6
SFPQP23246 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC14.83□□□□□ -0.037e-8■■□□□ 11.6
SFPQP23246 TNRC6A-211ENST00000566108 454 ntTSL 314.51□□□□□ -0.097e-8■■□□□ 11.6
SFPQP23246 IQSEC1-205ENST00000618604 3744 ntTSL 1 (best) BASIC13.03□□□□□ -0.327e-8■■□□□ 11.6
SFPQP23246 PCMT1-208ENST00000486585 801 ntTSL 311.09□□□□□ -0.637e-8■■□□□ 11.6
SFPQP23246 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.85□□□□□ -0.997e-8■■□□□ 11.6
SFPQP23246 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -17e-8■■□□□ 11.6
SFPQP23246 MVB12B-205ENST00000489570 479 ntTSL 35.24□□□□□ -1.577e-8■■□□□ 11.6
SFPQP23246 MVB12B-203ENST00000470567 421 ntTSL 54.32□□□□□ -1.727e-8■■□□□ 11.6
SFPQP23246 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.996e-7■■□□□ 11.6
SFPQP23246 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.921e-6■■□□□ 11.6
SFPQP23246 SEPT9-247ENST00000593189 817 ntTSL 512.67□□□□□ -0.381e-6■■□□□ 11.6
SFPQP23246 TBL1XR1-229ENST00000636912 100 ntTSL 50.03□□□□□ -2.43e-6■■□□□ 11.6
SFPQP23246 FTCD-211ENST00000494498 840 ntTSL 321.71■■□□□ 1.076e-10■■□□□ 11.6
SFPQP23246 FTCD-206ENST00000460011 1260 ntTSL 1 (best)21.41■■□□□ 1.026e-10■■□□□ 11.6
SFPQP23246 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC29.78■■■□□ 2.363e-8■■□□□ 11.6
SFPQP23246 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.263e-8■■□□□ 11.6
SFPQP23246 NAP1L4-203ENST00000430811 860 ntTSL 228.5■■■□□ 2.155e-7■■□□□ 11.6
SFPQP23246 ASAH1-250ENST00000637536 562 ntTSL 424.84■■□□□ 1.572e-6■■□□□ 11.6
SFPQP23246 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.08■■□□□ 1.135e-7■■□□□ 11.6
SFPQP23246 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.23■□□□□ 0.993e-8■■□□□ 11.6
SFPQP23246 ASAH1-266ENST00000637946 913 ntTSL 520.56■□□□□ 0.882e-6■■□□□ 11.6
SFPQP23246 NAP1L4-213ENST00000526842 535 ntTSL 519.96■□□□□ 0.795e-7■■□□□ 11.6
SFPQP23246 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.755e-7■■□□□ 11.6
SFPQP23246 ASAH1-209ENST00000520051 667 ntTSL 519.54■□□□□ 0.722e-6■■□□□ 11.6
SFPQP23246 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.712e-6■■□□□ 11.6
SFPQP23246 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.26■□□□□ 0.675e-7■■□□□ 11.6
SFPQP23246 CDK19-208ENST00000497709 1117 ntTSL 317.11■□□□□ 0.332e-6■■□□□ 11.6
SFPQP23246 ASAH1-247ENST00000637429 2558 ntTSL 516.97■□□□□ 0.312e-6■■□□□ 11.6
SFPQP23246 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)16.78■□□□□ 0.282e-6■■□□□ 11.6
SFPQP23246 ASAH1-241ENST00000637013 2649 ntTSL 516.68■□□□□ 0.262e-6■■□□□ 11.6
SFPQP23246 CDK19-207ENST00000468997 1083 ntTSL 1 (best)16.15■□□□□ 0.182e-6■■□□□ 11.6
SFPQP23246 ACTR3B-204ENST00000479402 5543 ntTSL 214.34□□□□□ -0.113e-8■■□□□ 11.6
SFPQP23246 GBE1-201ENST00000429644 3461 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.132e-6■■□□□ 11.6
SFPQP23246 CDK19-205ENST00000460913 448 ntTSL 514.07□□□□□ -0.162e-6■■□□□ 11.6
SFPQP23246 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC14.04□□□□□ -0.162e-6■■□□□ 11.6
SFPQP23246 CDK19-204ENST00000457688 955 ntTSL 511.93□□□□□ -0.52e-6■■□□□ 11.6
SFPQP23246 NAP1L4-221ENST00000534372 544 ntTSL 511.77□□□□□ -0.535e-7■■□□□ 11.6
SFPQP23246 ASAH1-248ENST00000637484 2304 ntTSL 510.08□□□□□ -0.82e-6■■□□□ 11.6
SFPQP23246 ASAH1-229ENST00000636537 1056 ntTSL 2 BASIC9.83□□□□□ -0.842e-6■■□□□ 11.6
SFPQP23246 CDK19-201ENST00000323817 6067 ntTSL 1 (best) BASIC9.81□□□□□ -0.842e-6■■□□□ 11.6
SFPQP23246 ASAH1-259ENST00000637792 581 ntTSL 49.68□□□□□ -0.862e-6■■□□□ 11.6
SFPQP23246 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC9.58□□□□□ -0.882e-6■■□□□ 11.6
SFPQP23246 ASAH1-225ENST00000636299 543 ntTSL 49.27□□□□□ -0.932e-6■■□□□ 11.6
Retrieved 100 of 4,991 protein–RNA pairs in 280.7 ms