Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.65■□□□□ 0.74
EXOSC1Q9Y3B2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.64■□□□□ 0.74
EXOSC1Q9Y3B2 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC1Q9Y3B2 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC1Q9Y3B2 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC1Q9Y3B2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC1Q9Y3B2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC1Q9Y3B2 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
EXOSC1Q9Y3B2 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 AC129492.7-201ENST00000622992 756 ntBASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.63■□□□□ 0.73
EXOSC1Q9Y3B2 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.62■□□□□ 0.73
EXOSC1Q9Y3B2 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 MIR4281-201ENST00000580852 62 ntBASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC1Q9Y3B2 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.6■□□□□ 0.73
EXOSC1Q9Y3B2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 LINC01960-201ENST00000563759 1884 ntBASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 AC139795.1-202ENST00000500444 432 ntBASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
EXOSC1Q9Y3B2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC1Q9Y3B2 SLC25A24-204ENST00000569674 2357 ntBASIC19.58■□□□□ 0.73
EXOSC1Q9Y3B2 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
EXOSC1Q9Y3B2 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.58■□□□□ 0.73
EXOSC1Q9Y3B2 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.58■□□□□ 0.73
EXOSC1Q9Y3B2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 AC244015.2-201ENST00000616358 1861 ntBASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
EXOSC1Q9Y3B2 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
EXOSC1Q9Y3B2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
EXOSC1Q9Y3B2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms