Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 AC136469.2-201ENST00000623944 1028 ntBASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.21■□□□□ 0.83
UBQLN4Q9NRR5 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 UNC93B3-201ENST00000308076 687 ntBASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.2■□□□□ 0.82
UBQLN4Q9NRR5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 OR2I1P-207ENST00000453522 948 ntBASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 AC087742.1-201ENST00000575880 1738 ntBASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
UBQLN4Q9NRR5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
UBQLN4Q9NRR5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 AC127496.7-201ENST00000625110 1798 ntBASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.17■□□□□ 0.82
UBQLN4Q9NRR5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 AL136162.1-201ENST00000607711 1078 ntBASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
UBQLN4Q9NRR5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBQLN4Q9NRR5 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms