Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CA15P2-201ENST00000611168 834 ntBASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD1Q96NR3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 AC068473.5-201ENST00000616428 2072 ntBASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.71■□□□□ 0.91
PTCHD1Q96NR3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
PTCHD1Q96NR3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD1Q96NR3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
PTCHD1Q96NR3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD1Q96NR3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 AC105265.2-201ENST00000467189 838 ntBASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.67■□□□□ 0.9
PTCHD1Q96NR3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD1Q96NR3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD1Q96NR3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD1Q96NR3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.66■□□□□ 0.9
PTCHD1Q96NR3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTCHD1Q96NR3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PTCHD1Q96NR3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.64■□□□□ 0.9
PTCHD1Q96NR3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.64■□□□□ 0.9
PTCHD1Q96NR3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
PTCHD1Q96NR3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PTCHD1Q96NR3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms