Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.48■■□□□ 1.67
KRT40Q6A162 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
KRT40Q6A162 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.48■■□□□ 1.67
KRT40Q6A162 AL031432.3-201ENST00000607698 485 ntBASIC25.48■■□□□ 1.67
KRT40Q6A162 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
KRT40Q6A162 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
KRT40Q6A162 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
KRT40Q6A162 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
KRT40Q6A162 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
KRT40Q6A162 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
KRT40Q6A162 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
KRT40Q6A162 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
KRT40Q6A162 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
KRT40Q6A162 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
KRT40Q6A162 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
KRT40Q6A162 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
KRT40Q6A162 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
KRT40Q6A162 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.46■■□□□ 1.67
KRT40Q6A162 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
KRT40Q6A162 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
KRT40Q6A162 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
KRT40Q6A162 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.45■■□□□ 1.67
KRT40Q6A162 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
KRT40Q6A162 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
KRT40Q6A162 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.45■■□□□ 1.66
KRT40Q6A162 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.45■■□□□ 1.66
KRT40Q6A162 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC25.45■■□□□ 1.66
KRT40Q6A162 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.45■■□□□ 1.66
KRT40Q6A162 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.45■■□□□ 1.66
KRT40Q6A162 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.45■■□□□ 1.66
KRT40Q6A162 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
KRT40Q6A162 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
KRT40Q6A162 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
KRT40Q6A162 AC127496.7-201ENST00000625110 1798 ntBASIC25.44■■□□□ 1.66
KRT40Q6A162 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.44■■□□□ 1.66
KRT40Q6A162 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
KRT40Q6A162 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.44■■□□□ 1.66
KRT40Q6A162 SUDS3P1-201ENST00000505831 966 ntBASIC25.44■■□□□ 1.66
KRT40Q6A162 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.44■■□□□ 1.66
KRT40Q6A162 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.44■■□□□ 1.66
KRT40Q6A162 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
KRT40Q6A162 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
KRT40Q6A162 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
KRT40Q6A162 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
KRT40Q6A162 EP400NL-214ENST00000641289 2402 ntBASIC25.43■■□□□ 1.66
KRT40Q6A162 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
KRT40Q6A162 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 SRD5A1P1-201ENST00000442297 786 ntBASIC25.43■■□□□ 1.66
KRT40Q6A162 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.43■■□□□ 1.66
KRT40Q6A162 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
KRT40Q6A162 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.43■■□□□ 1.66
KRT40Q6A162 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.43■■□□□ 1.66
KRT40Q6A162 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.43■■□□□ 1.66
KRT40Q6A162 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
KRT40Q6A162 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
KRT40Q6A162 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 pRNA.6-201ENST00000610482 90 ntBASIC25.42■■□□□ 1.66
KRT40Q6A162 pRNA.5-201ENST00000612139 90 ntBASIC25.42■■□□□ 1.66
KRT40Q6A162 pRNA.11-201ENST00000618423 90 ntBASIC25.42■■□□□ 1.66
KRT40Q6A162 pRNA.13-201ENST00000619112 90 ntBASIC25.42■■□□□ 1.66
KRT40Q6A162 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
KRT40Q6A162 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
KRT40Q6A162 AC079834.2-201ENST00000609776 1949 ntBASIC25.41■■□□□ 1.66
KRT40Q6A162 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
KRT40Q6A162 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 UNC93B3-201ENST00000308076 687 ntBASIC25.41■■□□□ 1.66
KRT40Q6A162 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.41■■□□□ 1.66
KRT40Q6A162 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.41■■□□□ 1.66
KRT40Q6A162 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
KRT40Q6A162 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
KRT40Q6A162 LINC01960-201ENST00000563759 1884 ntBASIC25.4■■□□□ 1.66
KRT40Q6A162 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
KRT40Q6A162 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
KRT40Q6A162 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.4■■□□□ 1.66
KRT40Q6A162 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.4■■□□□ 1.66
KRT40Q6A162 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.4■■□□□ 1.66
KRT40Q6A162 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.66
KRT40Q6A162 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms