Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SNX3O60493 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SNX3O60493 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SNX3O60493 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SNX3O60493 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SNX3O60493 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.76■■□□□ 1.07
SNX3O60493 LINC01521-201ENST00000504184 1943 ntBASIC21.76■■□□□ 1.07
SNX3O60493 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
SNX3O60493 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SNX3O60493 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.75■■□□□ 1.07
SNX3O60493 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.75■■□□□ 1.07
SNX3O60493 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SNX3O60493 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.75■■□□□ 1.07
SNX3O60493 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SNX3O60493 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.74■■□□□ 1.07
SNX3O60493 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
SNX3O60493 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.74■■□□□ 1.07
SNX3O60493 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.74■■□□□ 1.07
SNX3O60493 RPS2P7-201ENST00000447334 885 ntBASIC21.74■■□□□ 1.07
SNX3O60493 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.74■■□□□ 1.07
SNX3O60493 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.74■■□□□ 1.07
SNX3O60493 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SNX3O60493 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SNX3O60493 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SNX3O60493 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.73■■□□□ 1.07
SNX3O60493 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SNX3O60493 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SNX3O60493 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SNX3O60493 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.73■■□□□ 1.07
SNX3O60493 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SNX3O60493 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.72■■□□□ 1.07
SNX3O60493 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SNX3O60493 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.72■■□□□ 1.07
SNX3O60493 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SNX3O60493 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SNX3O60493 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SNX3O60493 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SNX3O60493 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SNX3O60493 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.72■■□□□ 1.07
SNX3O60493 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.71■■□□□ 1.07
SNX3O60493 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.71■■□□□ 1.07
SNX3O60493 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.71■■□□□ 1.07
SNX3O60493 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.71■■□□□ 1.07
SNX3O60493 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SNX3O60493 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.71■■□□□ 1.07
SNX3O60493 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SNX3O60493 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SNX3O60493 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SNX3O60493 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.7■■□□□ 1.06
SNX3O60493 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.7■■□□□ 1.06
SNX3O60493 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SNX3O60493 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SNX3O60493 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.7■■□□□ 1.06
SNX3O60493 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
SNX3O60493 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SNX3O60493 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.69■■□□□ 1.06
SNX3O60493 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.69■■□□□ 1.06
SNX3O60493 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.69■■□□□ 1.06
SNX3O60493 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.69■■□□□ 1.06
SNX3O60493 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.69■■□□□ 1.06
SNX3O60493 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SNX3O60493 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SNX3O60493 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.68■■□□□ 1.06
SNX3O60493 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SNX3O60493 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms