Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AL450346.2-201ENST00000495602 1024 ntBASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 AC068760.1-201ENST00000493579 1953 ntBASIC12.96□□□□□ -0.34
COL28A1Q2UY09 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 AC111170.3-201ENST00000624282 2464 ntBASIC12.96□□□□□ -0.34
COL28A1Q2UY09 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
COL28A1Q2UY09 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 MIR193A-201ENST00000384882 88 ntBASIC12.95□□□□□ -0.34
COL28A1Q2UY09 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AC004910.1-201ENST00000433493 787 ntBASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AC093700.1-201ENST00000503348 717 ntBASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AC099343.1-201ENST00000513481 609 ntBASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL28A1Q2UY09 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL28A1Q2UY09 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms