Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 AL449266.1-201ENST00000357393 557 ntAPPRIS P1 TSL 4 BASIC10.55□□□□□ -0.724e-6■■■■□ 21.7
SMNDC1O75940 CLCC1-201ENST00000302500 1316 ntTSL 1 (best) BASIC9.99□□□□□ -0.814e-6■■■■□ 21.7
SMNDC1O75940 SPATA5-202ENST00000422835 2492 ntTSL 1 (best)9.96□□□□□ -0.814e-6■■■■□ 21.7
SMNDC1O75940 MBD4-208ENST00000509828 576 ntTSL 29.46□□□□□ -0.94e-6■■■■□ 21.7
SMNDC1O75940 CLCC1-206ENST00000369970 2078 ntAPPRIS P3 TSL 5 BASIC9.41□□□□□ -0.94e-6■■■■□ 21.7
SMNDC1O75940 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.944e-6■■■■□ 21.7
SMNDC1O75940 OGFR-203ENST00000450048 553 ntTSL 38.94□□□□□ -0.984e-6■■■■□ 21.7
SMNDC1O75940 ATAD2-205ENST00000521903 5143 ntTSL 1 (best) BASIC8.67□□□□□ -1.028e-9■■■■□ 21.7
SMNDC1O75940 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.034e-6■■■■□ 21.7
SMNDC1O75940 CCT8-204ENST00000470450 1872 ntTSL 1 (best)8.63□□□□□ -1.034e-6■■■■□ 21.7
SMNDC1O75940 ATAD2-207ENST00000534257 544 ntTSL 48.42□□□□□ -1.064e-6■■■■□ 21.7
SMNDC1O75940 CCT8-202ENST00000431234 968 ntTSL 58.42□□□□□ -1.064e-6■■■■□ 21.7
SMNDC1O75940 CCT8-212ENST00000626972 1862 ntTSL 2 BASIC8.11□□□□□ -1.114e-6■■■■□ 21.7
SMNDC1O75940 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.174e-6■■■■□ 21.7
SMNDC1O75940 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.16□□□□□ -1.264e-6■■■■□ 21.7
SMNDC1O75940 CCT8-207ENST00000481059 879 ntTSL 57.13□□□□□ -1.274e-6■■■■□ 21.7
SMNDC1O75940 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.75□□□□□ -1.334e-6■■■■□ 21.7
SMNDC1O75940 ATAD2-203ENST00000519124 4650 ntTSL 1 (best)6.51□□□□□ -1.378e-9■■■■□ 21.7
SMNDC1O75940 NPTN-203ENST00000561898 447 ntTSL 25.97□□□□□ -1.454e-6■■■■□ 21.7
SMNDC1O75940 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.54e-6■■■■□ 21.7
SMNDC1O75940 NUP62CL-203ENST00000432145 688 ntAPPRIS P1 TSL 55.59□□□□□ -1.514e-6■■■■□ 21.7
SMNDC1O75940 USP14-209ENST00000583119 578 ntTSL 54.78□□□□□ -1.644e-6■■■■□ 21.7
SMNDC1O75940 NOTUM-203ENST00000477214 813 ntTSL 521.15■□□□□ 0.981e-7■■■■□ 21.7
SMNDC1O75940 HMGB2-204ENST00000506267 629 ntTSL 320.13■□□□□ 0.811e-6■■■■□ 21.6
SMNDC1O75940 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.171e-6■■■■□ 21.6
SMNDC1O75940 HMGB2-205ENST00000511316 1841 ntTSL 213.42□□□□□ -0.261e-6■■■■□ 21.6
SMNDC1O75940 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.531e-6■■■■□ 21.6
SMNDC1O75940 HMGN1-217ENST00000489072 1014 ntTSL 322.42■■□□□ 1.184e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-207ENST00000436324 1045 ntTSL 216.48■□□□□ 0.234e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-206ENST00000431390 1552 ntTSL 316.38■□□□□ 0.214e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-219ENST00000491183 527 ntTSL 216.18■□□□□ 0.184e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-212ENST00000479586 841 ntTSL 215.75■□□□□ 0.114e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.75■□□□□ 0.114e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-210ENST00000464078 508 ntTSL 515.62■□□□□ 0.094e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-209ENST00000463631 583 ntTSL 315.62■□□□□ 0.094e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.084e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-214ENST00000482733 701 ntTSL 214.81□□□□□ -0.044e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-216ENST00000486741 4299 ntTSL 213.26□□□□□ -0.294e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-208ENST00000443046 823 ntTSL 313.01□□□□□ -0.334e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-220ENST00000492280 2707 ntTSL 512.57□□□□□ -0.44e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-202ENST00000380747 709 ntTSL 3 BASIC8.27□□□□□ -1.094e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-205ENST00000419378 850 ntTSL 28.18□□□□□ -1.14e-7■■■■□ 21.6
SMNDC1O75940 HMGN1-201ENST00000288344 1303 ntTSL 28.08□□□□□ -1.124e-7■■■■□ 21.6
SMNDC1O75940 SNHG17-207ENST00000449469 2138 ntTSL 217.61■□□□□ 0.412e-9■■■■□ 21.6
SMNDC1O75940 MXD3-205ENST00000503473 2279 ntTSL 527.51■■□□□ 1.999e-6■■■■□ 21.6
SMNDC1O75940 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.649e-6■■■■□ 21.6
SMNDC1O75940 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.369e-6■■■■□ 21.6
SMNDC1O75940 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.44■■□□□ 1.349e-6■■■■□ 21.6
SMNDC1O75940 HGS-209ENST00000573080 1809 nt22.24■■□□□ 1.159e-6■■■■□ 21.6
SMNDC1O75940 TANGO2-222ENST00000479679 894 ntTSL 221.59■■□□□ 1.056e-9■■■■□ 21.6
SMNDC1O75940 RAB24-205ENST00000471466 1642 ntTSL 521.52■■□□□ 1.049e-6■■■■□ 21.6
SMNDC1O75940 PKP3-206ENST00000528036 940 ntTSL 220.82■□□□□ 0.929e-6■■■■□ 21.6
SMNDC1O75940 PKP3-210ENST00000533249 1111 ntTSL 320.68■□□□□ 0.99e-6■■■■□ 21.6
SMNDC1O75940 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.14■□□□□ 0.819e-6■■■■□ 21.6
SMNDC1O75940 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.779e-6■■■■□ 21.6
SMNDC1O75940 RAB24-206ENST00000478234 1820 ntTSL 219.39■□□□□ 0.79e-6■■■■□ 21.6
SMNDC1O75940 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.699e-6■■■■□ 21.6
SMNDC1O75940 RAB24-207ENST00000495458 1608 ntTSL 219.3■□□□□ 0.689e-6■■■■□ 21.6
SMNDC1O75940 TFR2-207ENST00000473374 891 ntTSL 519.3■□□□□ 0.689e-6■■■■□ 21.6
SMNDC1O75940 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.16■□□□□ 0.669e-6■■■■□ 21.6
SMNDC1O75940 SLC27A5-205ENST00000595851 2003 ntTSL 219.03■□□□□ 0.649e-6■■■■□ 21.6
SMNDC1O75940 PKP3-211ENST00000534401 756 ntTSL 319.01■□□□□ 0.639e-6■■■■□ 21.6
SMNDC1O75940 PKP3-205ENST00000527442 847 ntTSL 318.62■□□□□ 0.579e-6■■■■□ 21.6
SMNDC1O75940 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.51■□□□□ 0.559e-6■■■■□ 21.6
SMNDC1O75940 ANKRD11-211ENST00000566973 442 ntTSL 218.49■□□□□ 0.559e-6■■■■□ 21.6
SMNDC1O75940 TFR2-204ENST00000462090 1844 ntTSL 518.42■□□□□ 0.549e-6■■■■□ 21.6
SMNDC1O75940 TUBGCP6-202ENST00000425018 1509 ntTSL 1 (best)18.41■□□□□ 0.549e-6■■■■□ 21.6
SMNDC1O75940 AC024592.3-201ENST00000592091 2118 ntTSL 218.23■□□□□ 0.519e-6■■■■□ 21.6
SMNDC1O75940 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.459e-6■■■■□ 21.6
SMNDC1O75940 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.64■□□□□ 0.419e-6■■■■□ 21.6
SMNDC1O75940 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.49e-6■■■■□ 21.6
SMNDC1O75940 TFR2-213ENST00000490084 2196 ntTSL 217.4■□□□□ 0.389e-6■■■■□ 21.6
SMNDC1O75940 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.24■□□□□ 0.359e-6■■■■□ 21.6
SMNDC1O75940 AKT1-218ENST00000557552 8396 ntTSL 516.96■□□□□ 0.319e-6■■■■□ 21.6
SMNDC1O75940 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.94■□□□□ 0.39e-6■■■■□ 21.6
SMNDC1O75940 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.8■□□□□ 0.289e-6■■■■□ 21.6
SMNDC1O75940 TFR2-212ENST00000476304 2421 ntTSL 516.74■□□□□ 0.279e-6■■■■□ 21.6
SMNDC1O75940 TUBGCP6-208ENST00000498611 5274 ntTSL 1 (best)16.58■□□□□ 0.249e-6■■■■□ 21.6
SMNDC1O75940 CDK10-218ENST00000565470 724 ntTSL 316.42■□□□□ 0.229e-6■■■■□ 21.6
SMNDC1O75940 AKT1-204ENST00000544168 1564 ntTSL 216.09■□□□□ 0.179e-6■■■■□ 21.6
SMNDC1O75940 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.169e-6■■■■□ 21.6
SMNDC1O75940 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.129e-6■■■■□ 21.6
SMNDC1O75940 ATG2A-202ENST00000418259 5654 ntTSL 515.73■□□□□ 0.119e-6■■■■□ 21.6
SMNDC1O75940 PKP3-208ENST00000531857 687 ntTSL 415.67■□□□□ 0.19e-6■■■■□ 21.6
SMNDC1O75940 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.55■□□□□ 0.089e-6■■■■□ 21.6
SMNDC1O75940 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.089e-6■■■■□ 21.6
SMNDC1O75940 RAB24-203ENST00000393610 870 ntTSL 515.4■□□□□ 0.069e-6■■■■□ 21.6
SMNDC1O75940 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.029e-6■■■■□ 21.6
SMNDC1O75940 TFR2-206ENST00000465294 2763 ntTSL 215.1■□□□□ 0.019e-6■■■■□ 21.6
SMNDC1O75940 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 09e-6■■■■□ 21.6
SMNDC1O75940 U2AF2-208ENST00000592874 849 ntTSL 515.05■□□□□ -09e-6■■■■□ 21.6
SMNDC1O75940 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.05■□□□□ -09e-6■■■■□ 21.6
SMNDC1O75940 AC024592.3-203ENST00000585661 431 ntAPPRIS P1 TSL 215.02■□□□□ -09e-6■■■■□ 21.6
SMNDC1O75940 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.02■□□□□ -09e-6■■■■□ 21.6
SMNDC1O75940 PKP3-209ENST00000533069 590 ntTSL 214.93□□□□□ -0.029e-6■■■■□ 21.6
SMNDC1O75940 NOL4L-208ENST00000475781 1127 ntTSL 514.89□□□□□ -0.031e-7■■■■□ 21.6
SMNDC1O75940 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.049e-6■■■■□ 21.6
SMNDC1O75940 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.73□□□□□ -0.051e-7■■■■□ 21.6
SMNDC1O75940 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.069e-6■■■■□ 21.6
SMNDC1O75940 HNRNPL-211ENST00000601047 1127 ntTSL 514.66□□□□□ -0.069e-6■■■■□ 21.6
Retrieved 100 of 11,362 protein–RNA pairs in 193.4 ms