Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC105265.2-201ENST00000467189 838 ntBASIC28.19■■■□□ 2.1
CACNA1FO60840 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
CACNA1FO60840 CA15P2-201ENST00000611168 834 ntBASIC28.19■■■□□ 2.1
CACNA1FO60840 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
CACNA1FO60840 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.19■■■□□ 2.1
CACNA1FO60840 AC008764.7-201ENST00000593779 1081 ntBASIC28.19■■■□□ 2.1
CACNA1FO60840 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CACNA1FO60840 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
CACNA1FO60840 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
CACNA1FO60840 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC28.18■■■□□ 2.1
CACNA1FO60840 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.18■■■□□ 2.1
CACNA1FO60840 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.18■■■□□ 2.1
CACNA1FO60840 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.18■■■□□ 2.1
CACNA1FO60840 AC091305.1-201ENST00000479476 895 ntBASIC28.18■■■□□ 2.1
CACNA1FO60840 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1FO60840 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
CACNA1FO60840 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CACNA1FO60840 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CACNA1FO60840 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.17■■■□□ 2.1
CACNA1FO60840 AP005435.1-201ENST00000529293 1178 ntBASIC28.17■■■□□ 2.1
CACNA1FO60840 LINC01960-201ENST00000563759 1884 ntBASIC28.17■■■□□ 2.1
CACNA1FO60840 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
CACNA1FO60840 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
CACNA1FO60840 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
CACNA1FO60840 IGHV3-19-201ENST00000521488 291 ntBASIC28.17■■■□□ 2.1
CACNA1FO60840 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.17■■■□□ 2.1
CACNA1FO60840 AL031602.1-201ENST00000633169 911 ntBASIC28.17■■■□□ 2.1
CACNA1FO60840 DUSP8P5-201ENST00000422884 1815 ntBASIC28.17■■■□□ 2.1
CACNA1FO60840 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
CACNA1FO60840 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC28.16■■■□□ 2.1
CACNA1FO60840 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CACNA1FO60840 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CACNA1FO60840 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.16■■■□□ 2.1
CACNA1FO60840 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
CACNA1FO60840 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC28.15■■■□□ 2.1
CACNA1FO60840 AC087239.1-201ENST00000622671 572 ntBASIC28.15■■■□□ 2.1
CACNA1FO60840 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
CACNA1FO60840 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC28.15■■■□□ 2.1
CACNA1FO60840 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
CACNA1FO60840 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.15■■■□□ 2.1
CACNA1FO60840 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
CACNA1FO60840 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
CACNA1FO60840 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
CACNA1FO60840 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.15■■■□□ 2.1
CACNA1FO60840 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.15■■■□□ 2.1
CACNA1FO60840 AC126544.1-201ENST00000580842 1059 ntBASIC28.15■■■□□ 2.1
CACNA1FO60840 AC068587.7-201ENST00000641602 218 ntBASIC28.15■■■□□ 2.1
CACNA1FO60840 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.1
CACNA1FO60840 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.14■■■□□ 2.1
CACNA1FO60840 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC28.14■■■□□ 2.1
CACNA1FO60840 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC28.14■■■□□ 2.1
CACNA1FO60840 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC28.14■■■□□ 2.1
CACNA1FO60840 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC28.14■■■□□ 2.1
CACNA1FO60840 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CACNA1FO60840 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
CACNA1FO60840 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CACNA1FO60840 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CACNA1FO60840 LGR4-203ENST00000480977 492 ntTSL 2 BASIC28.13■■■□□ 2.09
CACNA1FO60840 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC28.13■■■□□ 2.09
CACNA1FO60840 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CACNA1FO60840 GCA-201ENST00000233612 1694 ntTSL 2 BASIC28.12■■■□□ 2.09
CACNA1FO60840 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC28.12■■■□□ 2.09
CACNA1FO60840 AC012414.1-201ENST00000556676 535 ntBASIC28.12■■■□□ 2.09
CACNA1FO60840 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.12■■■□□ 2.09
CACNA1FO60840 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CACNA1FO60840 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.12■■■□□ 2.09
CACNA1FO60840 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
CACNA1FO60840 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
CACNA1FO60840 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CACNA1FO60840 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC28.12■■■□□ 2.09
CACNA1FO60840 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CACNA1FO60840 RBM38-205ENST00000440234 686 ntTSL 2 BASIC28.11■■■□□ 2.09
CACNA1FO60840 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CACNA1FO60840 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CACNA1FO60840 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CACNA1FO60840 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC28.11■■■□□ 2.09
CACNA1FO60840 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC28.11■■■□□ 2.09
CACNA1FO60840 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC28.11■■■□□ 2.09
CACNA1FO60840 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CACNA1FO60840 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.11■■■□□ 2.09
CACNA1FO60840 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CACNA1FO60840 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.1■■■□□ 2.09
CACNA1FO60840 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.1■■■□□ 2.09
CACNA1FO60840 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC28.1■■■□□ 2.09
CACNA1FO60840 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
CACNA1FO60840 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CACNA1FO60840 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CACNA1FO60840 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
CACNA1FO60840 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC28.09■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms