Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PPARG-206ENST00000397012 2006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 U3.5-201ENST00000363448 216 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 MYOZ3-205ENST00000520112 605 ntTSL 4 BASIC15.91■□□□□ 0.14
HMGB1P09429 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 METTL7AP1-201ENST00000547343 496 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 CR383656.3-201ENST00000551315 183 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 RN7SL134P-201ENST00000579756 303 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 AP001120.3-201ENST00000585729 489 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 AP001462.1-201ENST00000594089 452 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 AC128714.1-201ENST00000637035 887 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 LINC00643-207ENST00000637212 734 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 AC017083.4-201ENST00000406334 2306 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HMGB1P09429 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 FPR2-203ENST00000598953 1544 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 MAX-212ENST00000555932 1673 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC15.9■□□□□ 0.14
HMGB1P09429 FTLP1-201ENST00000449155 526 ntBASIC15.9■□□□□ 0.14
HMGB1P09429 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 AC005777.1-201ENST00000588332 187 ntBASIC15.9■□□□□ 0.14
HMGB1P09429 DBP-202ENST00000593500 712 ntTSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
HMGB1P09429 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.9■□□□□ 0.14
HMGB1P09429 L3MBTL1-202ENST00000373134 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HMGB1P09429 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.9■□□□□ 0.14
HMGB1P09429 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC15.89■□□□□ 0.14
HMGB1P09429 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 SFTPA1-203ENST00000428376 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 NFIX-201ENST00000358552 1727 ntTSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 KRT18P40-201ENST00000599859 1571 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms