Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 CXorf40A-203ENST00000422892 1536 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A3P12111 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
COL6A3P12111 TNRC18P2-201ENST00000417666 2714 ntBASIC13.33□□□□□ -0.28
COL6A3P12111 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.28
COL6A3P12111 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 AL451165.1-201ENST00000334441 328 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 SLAMF9-202ENST00000368093 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 FAM238A-201ENST00000412114 1091 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 TMED5-204ENST00000479918 1296 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A3P12111 AC245164.1-201ENST00000517731 412 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A3P12111 ITGB2-AS1-205ENST00000609694 555 ntTSL 4 BASIC13.32□□□□□ -0.28
COL6A3P12111 CKLF-CMTM1-205ENST00000615332 395 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 PRAMEF7-201ENST00000330881 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 WDSUB1-204ENST00000409124 1600 ntTSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 AC126177.1-201ENST00000547829 2218 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 CST8-201ENST00000246012 890 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 CHCHD5-201ENST00000324913 691 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 ALKBH2-202ENST00000429722 1159 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 AC009245.1-201ENST00000456481 862 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 RNA5SP520-201ENST00000516506 113 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 RNA5SP523-201ENST00000516858 113 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 AP001922.3-201ENST00000524768 842 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A3P12111 AC120114.5-201ENST00000562285 556 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 AC007923.4-201ENST00000578650 568 ntTSL 4 BASIC13.32□□□□□ -0.28
COL6A3P12111 RN7SL275P-201ENST00000582762 335 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 KCNAB1-203ENST00000389636 1806 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 IGHV3-38-201ENST00000390618 426 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL6A3P12111 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
COL6A3P12111 APOBEC3H-204ENST00000442487 988 ntAPPRIS P3 TSL 3 BASIC13.32□□□□□ -0.28
COL6A3P12111 SLC48A1-202ENST00000442892 1024 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 LINC01702-203ENST00000635350 745 ntTSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 AL596257.1-201ENST00000641463 2694 ntBASIC13.32□□□□□ -0.28
COL6A3P12111 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 SMTNL1-201ENST00000399154 1536 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
COL6A3P12111 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL6A3P12111 LRRC6-203ENST00000518642 1674 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A3P12111 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 GUCY1B3-207ENST00000513437 2355 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 MRGPRX1-201ENST00000302797 1190 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
COL6A3P12111 GOT1L1-201ENST00000307599 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 CNIH1-202ENST00000395573 1233 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 TSN-202ENST00000409193 1436 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 Z98885.1-201ENST00000444011 465 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 CNIH1-207ENST00000557690 838 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A3P12111 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 AL356299.2-201ENST00000609218 586 ntTSL 4 BASIC13.31□□□□□ -0.28
COL6A3P12111 FAM238C-201ENST00000638416 868 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 ARSG-202ENST00000452479 1733 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 POPDC2-204ENST00000468801 1345 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 AL021068.1-201ENST00000392097 911 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 RDH11-202ENST00000428130 1064 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 KRT128P-201ENST00000550729 663 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 KRT18P7-201ENST00000557241 1219 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 HCFC1R1-206ENST00000574151 618 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 RN7SL73P-201ENST00000585239 252 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 Metazoa_SRP.160-201ENST00000622203 277 ntBASIC13.31□□□□□ -0.28
COL6A3P12111 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 PAX6-217ENST00000481563 1587 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A3P12111 PABPC1-219ENST00000522387 2331 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A3P12111 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 SEC22C-205ENST00000417572 1513 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A3P12111 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A3P12111 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
COL6A3P12111 RIC3-204ENST00000419822 1300 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms