Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGB1P09429 AC025186.1-201ENST00000478174 870 ntBASIC16.17■□□□□ 0.18
HMGB1P09429 IMP3P2-201ENST00000489760 475 ntBASIC16.17■□□□□ 0.18
HMGB1P09429 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 RN7SKP155-201ENST00000516031 288 ntBASIC16.17■□□□□ 0.18
HMGB1P09429 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.17■□□□□ 0.18
HMGB1P09429 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HMGB1P09429 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC16.17■□□□□ 0.18
HMGB1P09429 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGB1P09429 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
HMGB1P09429 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HMGB1P09429 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC16.17■□□□□ 0.18
HMGB1P09429 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB1P09429 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 AC011700.1-201ENST00000610409 2627 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB1P09429 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HMGB1P09429 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 EGLN3-205ENST00000547327 2849 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB1P09429 RNVU1-8-201ENST00000364272 125 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 AL512430.1-201ENST00000392575 860 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB1P09429 AC079250.1-201ENST00000456046 531 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 RPL18AP3-201ENST00000462885 528 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB1P09429 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.16■□□□□ 0.18
HMGB1P09429 AC019193.1-201ENST00000506678 823 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB1P09429 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
HMGB1P09429 AL132994.1-201ENST00000554098 400 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB1P09429 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGB1P09429 AC007250.1-201ENST00000608934 338 ntBASIC16.16■□□□□ 0.18
HMGB1P09429 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB1P09429 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HMGB1P09429 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HMGB1P09429 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB1P09429 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB1P09429 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGB1P09429 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB1P09429 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 ACTBP14-201ENST00000411655 1089 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms