Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 MKRN5P-201ENST00000445263 1467 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ANKRD30BP2-201ENST00000435744 1610 ntBASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
PDLIM3Q53GG5 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 MBNL1-AS1-202ENST00000608395 6585 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 F2-205ENST00000530231 1849 ntTSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SMS-201ENST00000379404 1174 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 HNRNPA1P27-201ENST00000412087 955 ntBASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 PFN2-206ENST00000461930 606 ntTSL 4 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 CR392039.2-201ENST00000623182 509 ntBASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 AC006453.1-201ENST00000636037 1257 ntBASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TGFBRAP1-203ENST00000595531 5595 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 EBF2-203ENST00000520164 5145 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 AC006254.1-201ENST00000468472 5640 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 TUBB4AP1-201ENST00000450755 1325 ntBASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 FBXW8-202ENST00000455858 4648 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
PDLIM3Q53GG5 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC11.55□□□□□ -0.56
PDLIM3Q53GG5 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms