Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.53■■■□□ 2.16
RTCBQ9Y3I0 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
RTCBQ9Y3I0 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
RTCBQ9Y3I0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
RTCBQ9Y3I0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
RTCBQ9Y3I0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 FP325331.1-202ENST00000623531 1380 ntBASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 DUX4L4-201ENST00000566884 1269 ntBASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 KRT18P61-201ENST00000585825 1298 ntBASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
RTCBQ9Y3I0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.16
RTCBQ9Y3I0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.51■■■□□ 2.16
RTCBQ9Y3I0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 RAP2CP1-201ENST00000605103 478 ntBASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
RTCBQ9Y3I0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RTCBQ9Y3I0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.5■■■□□ 2.15
RTCBQ9Y3I0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
RTCBQ9Y3I0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RTCBQ9Y3I0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
RTCBQ9Y3I0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 AC016769.1-201ENST00000409132 1010 ntBASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 CDCA4P2-201ENST00000441182 718 ntBASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.49■■■□□ 2.15
RTCBQ9Y3I0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 AC137761.2-201ENST00000561729 223 ntBASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 AC145350.3-201ENST00000569033 163 ntBASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.48■■■□□ 2.15
RTCBQ9Y3I0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 AC073111.5-205ENST00000641717 521 ntBASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 AC145676.1-201ENST00000514988 2004 ntBASIC28.47■■■□□ 2.15
RTCBQ9Y3I0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.46■■■□□ 2.15
RTCBQ9Y3I0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.15
RTCBQ9Y3I0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
RTCBQ9Y3I0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 GAS2L1P2-201ENST00000436355 1356 ntBASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTCBQ9Y3I0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
RTCBQ9Y3I0 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
RTCBQ9Y3I0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.43■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms