Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM39Q9HCM9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 AC135279.3-201ENST00000610945 1311 ntBASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 AC024257.2-201ENST00000549699 147 ntBASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 AC133561.4-201ENST00000566112 224 ntBASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 MIR3181-201ENST00000578512 73 ntBASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM39Q9HCM9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 pRNA.6-201ENST00000610482 90 ntBASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 pRNA.5-201ENST00000612139 90 ntBASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 AC011298.3-201ENST00000615796 283 ntBASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 pRNA.11-201ENST00000618423 90 ntBASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 pRNA.13-201ENST00000619112 90 ntBASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM39Q9HCM9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM39Q9HCM9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 MIR638-201ENST00000385237 100 ntBASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 AL499627.2-201ENST00000606283 725 ntBASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 ANOS2P-203ENST00000472227 1816 ntBASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM39Q9HCM9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM39Q9HCM9 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 AL353803.4-201ENST00000565882 1934 ntBASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.03■■□□□ 1.12
TRIM39Q9HCM9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 AC136469.2-201ENST00000623944 1028 ntBASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 AC092068.2-201ENST00000590491 1708 ntBASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TRIM39Q9HCM9 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
TRIM39Q9HCM9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.02■■□□□ 1.11
TRIM39Q9HCM9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 AC005837.3-201ENST00000612163 286 ntBASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms