Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.08■□□□□ 03e-11■■■■□ 21.7
LSM11P83369 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.223e-11■■■■□ 21.7
LSM11P83369 TPM1-210ENST00000558264 2687 ntTSL 29.98□□□□□ -0.813e-11■■■■□ 21.7
LSM11P83369 TPM1-212ENST00000558347 1525 ntTSL 59.18□□□□□ -0.943e-11■■■■□ 21.7
LSM11P83369 LINC01194-201ENST00000505196 540 ntTSL 1 (best)10.58□□□□□ -0.725e-7■■■■□ 21.7
LSM11P83369 LINC01194-203ENST00000513051 670 ntTSL 1 (best) BASIC10.58□□□□□ -0.725e-7■■■■□ 21.7
LSM11P83369 UBE2J2-213ENST00000471154 336 ntTSL 57.11□□□□□ -1.271e-6■■■■□ 21.7
LSM11P83369 SLC19A1-203ENST00000417954 3572 ntTSL 1 (best)13.82□□□□□ -0.23e-7■■■■□ 21.7
LSM11P83369 DDX56-211ENST00000479602 440 ntTSL 27.84□□□□□ -1.153e-7■■■■□ 21.6
LSM11P83369 KIAA0895L-207ENST00000563918 798 ntTSL 215.39■□□□□ 0.057e-7■■■■□ 21.6
LSM11P83369 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.128e-7■■■■□ 21.6
LSM11P83369 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.068e-7■■■■□ 21.6
LSM11P83369 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -01e-7■■■■□ 21.6
LSM11P83369 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.45□□□□□ -0.18e-7■■■■□ 21.6
LSM11P83369 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.215e-6■■■■□ 21.6
LSM11P83369 SYNCRIP-203ENST00000444272 610 ntTSL 312.94□□□□□ -0.341e-7■■■■□ 21.6
LSM11P83369 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.19□□□□□ -0.468e-7■■■■□ 21.6
LSM11P83369 CORO7-202ENST00000537233 3392 ntTSL 2 BASIC11.98□□□□□ -0.495e-6■■■■□ 21.6
LSM11P83369 CHID1-205ENST00000454838 3255 ntTSL 5 BASIC11.96□□□□□ -0.498e-7■■■■□ 21.6
LSM11P83369 CORO7-208ENST00000571227 3578 ntTSL 511.69□□□□□ -0.545e-6■■■■□ 21.6
LSM11P83369 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.611e-7■■■■□ 21.6
LSM11P83369 CHID1-204ENST00000449825 3537 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.668e-7■■■■□ 21.6
LSM11P83369 CHID1-210ENST00000526714 976 ntTSL 59.82□□□□□ -0.848e-7■■■■□ 21.6
LSM11P83369 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.28□□□□□ -1.561e-7■■■■□ 21.6
LSM11P83369 NECAB3-211ENST00000485399 1373 ntTSL 219.63■□□□□ 0.733e-7■■■■□ 21.6
LSM11P83369 NECAB3-213ENST00000488489 2142 ntTSL 218.75■□□□□ 0.591e-7■■■■□ 21.6
LSM11P83369 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.49■□□□□ 0.551e-7■■■■□ 21.6
LSM11P83369 NECAB3-222ENST00000607805 969 ntTSL 518.38■□□□□ 0.535e-7■■■■□ 21.6
LSM11P83369 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.471e-7■■■■□ 21.6
LSM11P83369 NECAB3-215ENST00000494174 859 ntTSL 517.08■□□□□ 0.323e-7■■■■□ 21.6
LSM11P83369 NECAB3-220ENST00000606699 1022 ntTSL 216.27■□□□□ 0.26e-7■■■■□ 21.6
LSM11P83369 NECAB3-214ENST00000493590 625 ntTSL 514.8□□□□□ -0.046e-7■■■■□ 21.6
LSM11P83369 NECAB3-203ENST00000439478 925 ntTSL 512.54□□□□□ -0.45e-7■■■■□ 21.6
LSM11P83369 NECAB3-219ENST00000606690 900 ntTSL 512.54□□□□□ -0.45e-7■■■■□ 21.6
LSM11P83369 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.28□□□□□ -1.42e-7■■■■□ 21.6
LSM11P83369 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC4.92□□□□□ -1.622e-7■■■■□ 21.6
LSM11P83369 SLC12A4-203ENST00000537830 3525 ntTSL 2 BASIC11.21□□□□□ -0.624e-6■■■■□ 21.6
LSM11P83369 SLC12A4-204ENST00000541864 3627 ntTSL 2 BASIC10.94□□□□□ -0.664e-6■■■■□ 21.6
LSM11P83369 KIAA0907-203ENST00000368321 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.682e-11■■■■□ 21.6
LSM11P83369 SLC12A4-219ENST00000576616 3768 ntTSL 2 BASIC10.6□□□□□ -0.714e-6■■■■□ 21.6
LSM11P83369 SLC12A4-206ENST00000570802 3761 ntTSL 210.25□□□□□ -0.774e-6■■■■□ 21.6
LSM11P83369 KIAA0907-202ENST00000368320 4499 ntTSL 1 (best) BASIC9.68□□□□□ -0.862e-11■■■■□ 21.6
LSM11P83369 SLC12A4-215ENST00000575857 588 ntTSL 39.64□□□□□ -0.874e-6■■■■□ 21.6
LSM11P83369 UBE2J2-212ENST00000467339 515 ntTSL 29.59□□□□□ -0.873e-6■■■■□ 21.6
LSM11P83369 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.45□□□□□ -0.15e-8■■■■□ 21.5
LSM11P83369 PKN2-204ENST00000436111 632 ntTSL 311.25□□□□□ -0.615e-8■■■■□ 21.5
LSM11P83369 PKN2-203ENST00000370521 6121 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.725e-8■■■■□ 21.5
LSM11P83369 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.5□□□□□ -1.535e-8■■■■□ 21.5
LSM11P83369 GGT7-203ENST00000469018 1064 ntTSL 513.28□□□□□ -0.281e-8■■■■□ 21.5
LSM11P83369 ANKRD11-204ENST00000378332 1982 ntTSL 219.52■□□□□ 0.723e-6■■■■□ 21.5
LSM11P83369 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.673e-6■■■■□ 21.5
LSM11P83369 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.443e-6■■■■□ 21.5
LSM11P83369 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.483e-6■■■■□ 21.5
LSM11P83369 ANKRD11-207ENST00000562816 573 ntTSL 410.04□□□□□ -0.83e-6■■■■□ 21.5
LSM11P83369 LINC01089-203ENST00000535614 480 ntTSL 414.41□□□□□ -0.15e-7■■■■□ 21.5
LSM11P83369 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.08□□□□□ -0.165e-7■■■■□ 21.5
LSM11P83369 LINC01089-205ENST00000536662 560 ntTSL 4 BASIC11.75□□□□□ -0.535e-7■■■■□ 21.5
LSM11P83369 SPATA20-207ENST00000504271 806 ntTSL 216.31■□□□□ 0.21e-8■■■■□ 21.4
LSM11P83369 SPATA20-214ENST00000508528 512 ntTSL 511.04□□□□□ -0.641e-8■■■■□ 21.4
LSM11P83369 ACAP3-212ENST00000492936 5319 ntTSL 1 (best)15.49■□□□□ 0.077e-7■■■■□ 21.4
LSM11P83369 TCF25-216ENST00000565860 437 ntTSL 316.84■□□□□ 0.299e-9■■■■□ 21.4
LSM11P83369 TCF25-218ENST00000566283 515 ntTSL 216.84■□□□□ 0.299e-9■■■■□ 21.4
LSM11P83369 TCF25-213ENST00000564957 459 ntTSL 316.84■□□□□ 0.299e-9■■■■□ 21.4
LSM11P83369 TCF25-220ENST00000567171 1535 ntTSL 214.87□□□□□ -0.039e-9■■■■□ 21.4
LSM11P83369 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.5■□□□□ 0.234e-7■■■■□ 21.4
LSM11P83369 RNF2-204ENST00000498201 631 ntTSL 214.77□□□□□ -0.054e-7■■■■□ 21.4
LSM11P83369 RNF2-203ENST00000453650 939 ntTSL 510.12□□□□□ -0.794e-7■■■■□ 21.4
LSM11P83369 RNF2-202ENST00000367510 3606 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.964e-7■■■■□ 21.4
LSM11P83369 GSE1-215ENST00000635906 666 ntTSL 311.16□□□□□ -0.627e-7■■■■□ 21.4
LSM11P83369 GSE1-204ENST00000411612 872 ntTSL 518.88■□□□□ 0.617e-7■■■■□ 21.3
LSM11P83369 ANP32A-208ENST00000495420 707 ntTSL 215.12■□□□□ 0.012e-7■■■■□ 21.3
LSM11P83369 ANP32A-202ENST00000409628 2001 ntTSL 514.71□□□□□ -0.052e-7■■■■□ 21.3
LSM11P83369 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.082e-7■■■■□ 21.3
LSM11P83369 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.362e-7■■■■□ 21.3
LSM11P83369 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.281e-6■■■■□ 21.3
LSM11P83369 CBFA2T3-210ENST00000569464 1327 ntTSL 1 (best)12.09□□□□□ -0.471e-6■■■■□ 21.3
LSM11P83369 CBFA2T3-209ENST00000569443 469 ntTSL 511.39□□□□□ -0.591e-6■■■■□ 21.3
LSM11P83369 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.139e-7■■■■□ 21.3
LSM11P83369 COMT-210ENST00000467943 546 ntTSL 221.19■□□□□ 0.989e-7■■■■□ 21.3
LSM11P83369 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.66■□□□□ 0.99e-7■■■■□ 21.3
LSM11P83369 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.89e-7■■■■□ 21.3
LSM11P83369 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.749e-7■■■■□ 21.3
LSM11P83369 COMT-207ENST00000412786 871 ntAPPRIS ALT2 TSL 214.02□□□□□ -0.179e-7■■■■□ 21.3
LSM11P83369 COMT-201ENST00000207636 1319 ntTSL 513.38□□□□□ -0.279e-7■■■■□ 21.3
LSM11P83369 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.279e-7■■■■□ 21.3
LSM11P83369 DMPK-215ENST00000598272 1410 nt23.41■■□□□ 1.346e-6■■■■□ 21.3
LSM11P83369 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.5■□□□□ 0.876e-6■■■■□ 21.3
LSM11P83369 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.856e-6■■■■□ 21.3
LSM11P83369 DMPK-207ENST00000593574 548 ntTSL 419.37■□□□□ 0.696e-6■■■■□ 21.3
LSM11P83369 DMPK-210ENST00000596686 2499 ntTSL 219.2■□□□□ 0.666e-6■■■■□ 21.3
LSM11P83369 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.66■□□□□ 0.586e-6■■■■□ 21.3
LSM11P83369 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.52■□□□□ 0.566e-6■■■■□ 21.3
LSM11P83369 MBD6-204ENST00000547545 1884 ntTSL 1 (best)18.01■□□□□ 0.476e-6■■■■□ 21.3
LSM11P83369 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.446e-6■■■■□ 21.3
LSM11P83369 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.266e-6■■■■□ 21.3
LSM11P83369 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.126e-6■■■■□ 21.3
LSM11P83369 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.116e-6■■■■□ 21.3
LSM11P83369 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.116e-6■■■■□ 21.3
LSM11P83369 DMPK-206ENST00000588522 2920 ntTSL 515.48■□□□□ 0.076e-6■■■■□ 21.3
LSM11P83369 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.65□□□□□ -0.066e-6■■■■□ 21.3
Retrieved 100 of 11,495 protein–RNA pairs in 60.7 ms