Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.42■■■□□ 2.14
RFC4P35249 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
RFC4P35249 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
RFC4P35249 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
RFC4P35249 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.41■■■□□ 2.14
RFC4P35249 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.41■■■□□ 2.14
RFC4P35249 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC28.41■■■□□ 2.14
RFC4P35249 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.41■■■□□ 2.14
RFC4P35249 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC28.41■■■□□ 2.14
RFC4P35249 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.41■■■□□ 2.14
RFC4P35249 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
RFC4P35249 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RFC4P35249 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RFC4P35249 AC016769.1-201ENST00000409132 1010 ntBASIC28.4■■■□□ 2.14
RFC4P35249 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.4■■■□□ 2.14
RFC4P35249 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
RFC4P35249 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.4■■■□□ 2.14
RFC4P35249 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.4■■■□□ 2.14
RFC4P35249 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.4■■■□□ 2.14
RFC4P35249 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.4■■■□□ 2.14
RFC4P35249 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.4■■■□□ 2.14
RFC4P35249 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RFC4P35249 FP325331.1-202ENST00000623531 1380 ntBASIC28.39■■■□□ 2.14
RFC4P35249 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RFC4P35249 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.39■■■□□ 2.14
RFC4P35249 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.39■■■□□ 2.13
RFC4P35249 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RFC4P35249 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.13
RFC4P35249 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RFC4P35249 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
RFC4P35249 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RFC4P35249 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
RFC4P35249 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
RFC4P35249 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.38■■■□□ 2.13
RFC4P35249 AC137761.2-201ENST00000561729 223 ntBASIC28.38■■■□□ 2.13
RFC4P35249 DUX4L4-201ENST00000566884 1269 ntBASIC28.38■■■□□ 2.13
RFC4P35249 AC145350.3-201ENST00000569033 163 ntBASIC28.38■■■□□ 2.13
RFC4P35249 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.38■■■□□ 2.13
RFC4P35249 KRT18P61-201ENST00000585825 1298 ntBASIC28.38■■■□□ 2.13
RFC4P35249 RAP2CP1-201ENST00000605103 478 ntBASIC28.38■■■□□ 2.13
RFC4P35249 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
RFC4P35249 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RFC4P35249 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.37■■■□□ 2.13
RFC4P35249 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RFC4P35249 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.37■■■□□ 2.13
RFC4P35249 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC28.37■■■□□ 2.13
RFC4P35249 CDCA4P2-201ENST00000441182 718 ntBASIC28.37■■■□□ 2.13
RFC4P35249 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
RFC4P35249 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC28.37■■■□□ 2.13
RFC4P35249 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC28.37■■■□□ 2.13
RFC4P35249 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RFC4P35249 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.36■■■□□ 2.13
RFC4P35249 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.36■■■□□ 2.13
RFC4P35249 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.36■■■□□ 2.13
RFC4P35249 AC073111.5-205ENST00000641717 521 ntBASIC28.36■■■□□ 2.13
RFC4P35249 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
RFC4P35249 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.35■■■□□ 2.13
RFC4P35249 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
RFC4P35249 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
RFC4P35249 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.35■■■□□ 2.13
RFC4P35249 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RFC4P35249 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.35■■■□□ 2.13
RFC4P35249 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.35■■■□□ 2.13
RFC4P35249 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.35■■■□□ 2.13
RFC4P35249 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
RFC4P35249 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.35■■■□□ 2.13
RFC4P35249 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
RFC4P35249 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC28.35■■■□□ 2.13
RFC4P35249 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RFC4P35249 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RFC4P35249 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RFC4P35249 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
RFC4P35249 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
RFC4P35249 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.34■■■□□ 2.13
RFC4P35249 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RFC4P35249 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RFC4P35249 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RFC4P35249 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.34■■■□□ 2.13
RFC4P35249 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
RFC4P35249 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
RFC4P35249 AC145676.1-201ENST00000514988 2004 ntBASIC28.33■■■□□ 2.13
RFC4P35249 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.33■■■□□ 2.13
RFC4P35249 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RFC4P35249 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RFC4P35249 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.33■■■□□ 2.13
RFC4P35249 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.33■■■□□ 2.13
RFC4P35249 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RFC4P35249 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RFC4P35249 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
RFC4P35249 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
RFC4P35249 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
RFC4P35249 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms